Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107439723 Ptep1.0/2.0 NW_024969882.1 9080 10246 + general transcription factor II-I repeat domain-containing protein 2A-like aug3.g8019,aug3.g14005,aug3.g11747 LOC107439723 0
LOC107439721 Ptep1.0/2.0 NW_024970257.1 6180 26934 + uncharacterized LOC107439721 aug3.g14000 LOC107439721 0
LOC107439722 Ptep1.0/2.0 NW_024970257.1 34909 41706 - soma ferritin aug3.g14001 LOC107439722 0
LOC107455632 Ptep1.0/2.0 NW_024970257.1 44225 86390 + nose resistant to fluoxetine protein 6 aug3.g14002 LOC107439720,LOC107455632 0
LOC107446597 Ptep1.0/2.0 NW_024970382.1 260152 281837 + tetraspanin-5 aug3.g1400 LOC107446597 0
LOC107439724 Ptep1.0/2.0 NW_024970528.1 56298 76615 - probable tRNA (guanine(26)-N(2))-dimethyltransferase aug3.g14003 LOC107439724 0
LOC122271046 Ptep1.0/2.0 NW_024970528.1 100076 189964 + uncharacterized LOC122271046 aug3.g14004 NA 0
LOC107439728 Ptep1.0/2.0 NW_024971127.1 144960 152619 - transmembrane emp24 domain-containing protein eca aug3.g14009 LOC107439728 0
LOC107439726 Ptep1.0/2.0 NW_024971987.1 1333 28638 + eukaryotic initiation factor 4A-III aug3.g14008 LOC107439726 0
LOC107442414 Ptep1.0/2.0 NW_024971987.1 29225 46372 - transcription factor IIIA aug3.g16572,aug3.g14006 LOC107442414 0
LOC122273228 Ptep1.0/2.0 NW_024974830.1 21 5131 - probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 aug3.g14003 NA 0
LOC122273925 Ptep1.0/2.0 NW_024983454.1 639 983 + transmembrane emp24 domain-containing protein eca-like aug3.g14009 LOC107439728 0
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02