Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268969 Ptep1.0/2.0 NW_024969708.1 3991962 3992701 - pseudogene aug3.g14286 NA 8e-69
LOC107449331 Ptep1.0/2.0 NW_024969727.1 1107128 1129956 + probable inactive tRNA-specific adenosine deaminase-like protein 3 aug3.g20700,aug3.g14289 LOC107449331 0
LOC107440134 Ptep1.0/2.0 NW_024969727.1 1134776 1141364 + uncharacterized LOC107440134 aug3.g14288 LOC107440134 0
LOC107440133 Ptep1.0/2.0 NW_024969727.1 1169057 1177116 + twist-related protein 2-like aug3.g14287 LOC107440133 0
LOC107440128 Ptep1.0/2.0 NW_024969887.1 8054 14966 - elongation factor 1-beta aug3.g14286 LOC107440128 0
LOC107440132 Ptep1.0/2.0 NW_024969887.1 18095 35336 + uncharacterized LOC107440132 aug3.g14285 LOC107440132 0
LOC107440127 Ptep1.0/2.0 NW_024969887.1 36075 54294 - glycogenin-1 aug3.g14284 LOC107440127 0
LOC107440125 Ptep1.0/2.0 NW_024969887.1 54606 79520 + WD repeat and FYVE domain-containing protein 2 aug3.g14283,aug3.g14282 LOC107440125 0
LOC107452690 Ptep1.0/2.0 NW_024969887.1 86495 125162 - uncharacterized LOC107452690 aug3.g14282,aug3.g21779 LOC107440131,LOC107452690 0
LOC107440130 Ptep1.0/2.0 NW_024969887.1 129671 145386 - sodium/potassium-transporting ATPase subunit beta aug3.g14281 LOC107440130 0
LOC107446699 Ptep1.0/2.0 NW_024970221.1 332060 397030 - autophagy-related protein 2 homolog B aug3.g1428 LOC107446699 0
LOC122273160 Ptep1.0/2.0 NW_024974457.1 1 5414 - autophagy-related protein 2 homolog A-like aug3.g1428 LOC107446699 0
LOC122273310 Ptep1.0/2.0 NW_024975350.1 442 5660 + WD repeat and FYVE domain-containing protein 1-like aug3.g14283 LOC107440125 0
13 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02