Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107440223 Ptep1.0/2.0 NW_024969624.1 653642 674021 + uncharacterized LOC107440223 aug3.g14367 LOC107440223,LOC107440519 0
LOC107440225 Ptep1.0/2.0 NW_024969624.1 679502 705491 - paired mesoderm homeobox protein 2 aug3.g14368 LOC107440225 0
LOC107440224 Ptep1.0/2.0 NW_024969624.1 798272 833635 + uncharacterized LOC107440224 aug3.g14369 LOC107440224 0
LOC107446563 Ptep1.0/2.0 NW_024969717.1 1016093 1070999 + acyl-coenzyme A synthetase ACSM3, mitochondrial aug3.g19268,aug3.g14363 LOC107446563 0
LOC107440219 Ptep1.0/2.0 NW_024969782.1 759023 1007825 + protein artichoke aug3.g14361 LOC107440219 0
LOC122269294 Ptep1.0/2.0 NW_024969782.1 1007873 1013774 + uncharacterized LOC122269294 aug3.g14361 NA 0
LOC107450521 Ptep1.0/2.0 NW_024969796.1 979669 1004719 - glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 aug3.g21223,aug3.g14360,aug3.g24694,aug3.g24563 LOC107450521,LOC107444344 0
LOC107446698 Ptep1.0/2.0 NW_024970221.1 12194 21632 + proline-rich protein PRCC aug3.g1436 LOC107446698 0
LOC107440221 Ptep1.0/2.0 NW_024970527.1 396018 423997 - low-density lipoprotein receptor-related protein 1 aug3.g14366 LOC107440221 0
LOC107444197 Ptep1.0/2.0 NW_024971970.1 691 4482 + uncharacterized LOC107444197 aug3.g14364 LOC107444197 1e-159
LOC122272912 Ptep1.0/2.0 NW_024973285.1 2813 9421 - low-density lipoprotein receptor-like aug3.g14366 NA 5e-141
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02