Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107440641 Ptep1.0/2.0 NW_024969624.1 838428 918918 - collagen alpha-1(XXII) chain aug3.g9773,aug3.g14370 LOC107440641 0
LOC122269123 Ptep1.0/2.0 NW_024969742.1 1398389 1400176 - general transcription factor II-I repeat domain-containing protein 2-like aug3.g14377 NA 0
LOC107446697 Ptep1.0/2.0 NW_024969854.1 858076 878314 - 28S ribosomal protein S11, mitochondrial aug3.g1437 LOC107446697 0
LOC107439995 Ptep1.0/2.0 NW_024969988.1 2355026 2355898 - general transcription factor II-I repeat domain-containing protein 2B-like aug3.g44,aug3.g19402,aug3.g14377,aug3.g22016,aug3.g22277,aug3.g20287 LOC107439995 0
LOC122270100 Ptep1.0/2.0 NW_024970048.1 440659 441795 - general transcription factor II-I repeat domain-containing protein 2-like aug3.g14377 NA 0
LOC122270849 Ptep1.0/2.0 NW_024970406.1 185721 186788 - general transcription factor II-I repeat domain-containing protein 2-like aug3.g14377 NA 0
LOC122271197 Ptep1.0/2.0 NW_024970634.1 20138 21205 - general transcription factor II-I repeat domain-containing protein 2-like aug3.g14377 NA 0
LOC107440240 Ptep1.0/2.0 NW_024970743.1 104190 175589 - protein patched-like aug3.g14374 LOC107440240 0
LOC107440236 Ptep1.0/2.0 NW_024970906.1 6992 43445 - caprin-1 aug3.g14372 LOC107440236 0
LOC107440235 Ptep1.0/2.0 NW_024970906.1 43829 90273 + dual specificity mitogen-activated protein kinase kinase 4 aug3.g17587,aug3.g14371 LOC107440235 0
LOC107440248 Ptep1.0/2.0 NW_024971267.1 97287 98303 + general transcription factor II-I repeat domain-containing protein 2-like aug3.g14377,aug3.g7118,aug3.g614,aug3.g14185,aug3.g5647 LOC107440248 0
LOC122272219 Ptep1.0/2.0 NW_024971646.1 28322 29389 - general transcription factor II-I repeat domain-containing protein 2-like aug3.g14377 NA 0
LOC122272440 Ptep1.0/2.0 NW_024972015.1 22104 23681 - general transcription factor II-I repeat domain-containing protein 2-like aug3.g14377 NA 0
LOC107440244 Ptep1.0/2.0 NW_024972638.1 12308 22629 + venom peptide SjAPI-2 aug3.g14379 LOC107440244 0
LOC122272839 Ptep1.0/2.0 NW_024973016.1 7055 8071 - general transcription factor II-I repeat domain-containing protein 2-like aug3.g14377 NA 0
15 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02