Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268741 Ptep1.0/2.0 NW_024969666.1 1319527 1321193 - uncharacterized LOC122268741 aug3.g2922,aug3.g14491 NA 0
LOC107440371 Ptep1.0/2.0 NW_024969844.1 897327 910510 - histone-lysine N-methyltransferase PRDM9-like aug3.g14500,aug3.g6109,aug3.g21935,aug3.g14498,aug3.g14497,aug3.g6110,aug3.g6107,aug3.g21328 LOC107440371 0
LOC122269888 Ptep1.0/2.0 NW_024969972.1 1419 12103 + uncharacterized LOC122269888 aug3.g14493 NA 2e-59
LOC122269892 Ptep1.0/2.0 NW_024969972.1 37602 37755 - 5.8S ribosomal RNA aug3.g14490 NA 2e-73
LOC122270213 Ptep1.0/2.0 NW_024970097.1 58951 61315 + uncharacterized LOC122270213 aug3.g14498 NA 2e-94
LOC107440373 Ptep1.0/2.0 NW_024970097.1 62305 69021 + histone-lysine N-methyltransferase PRDM9-like aug3.g14498 LOC107440373 0
LOC122270211 Ptep1.0/2.0 NW_024970097.1 88325 91342 + gastrula zinc finger protein XlCGF52.1-like aug3.g14497 NA 0
LOC122270212 Ptep1.0/2.0 NW_024970097.1 105419 121377 + histone-lysine N-methyltransferase PRDM9-like aug3.g14497 NA 0
LOC107440367 Ptep1.0/2.0 NW_024970283.1 142278 294380 + pancreatic lipase-related protein 2-like aug3.g14496,aug3.g27436 LOC107440367 0
LOC107440366 Ptep1.0/2.0 NW_024970283.1 296506 311386 - cholecystokinin receptor type A-like aug3.g14495 LOC107440366 0
LOC107446745 Ptep1.0/2.0 NW_024970646.1 122886 124604 + 28S ribosomal protein S9, mitochondrial aug3.g1449 LOC107446745 0
LOC110282744 Ptep1.0/2.0 NW_024971345.1 9161 10780 - uncharacterized LOC110282744 aug3.g19581,aug3.g14492,aug3.g14489 LOC110282744 0
LOC122273061 Ptep1.0/2.0 NW_024973895.1 6243 8855 - uncharacterized LOC122273061 aug3.g14494 NA 0
LOC107437295 Ptep1.0/2.0 NW_024974061.1 191 2551 + uncharacterized LOC107437295 aug3.g15941,aug3.g14499,aug3.g4640,aug3.g15940,aug3.g25376 LOC107437295 0
14 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02