Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107446217 Ptep1.0/2.0 NW_024969938.1 162893 181637 + NEDD8-activating enzyme E1 catalytic subunit aug3.g19017,aug3.g14534 LOC107446217 0
LOC107440409 Ptep1.0/2.0 NW_024969938.1 184232 196059 - UPF0602 protein C4orf47 homolog aug3.g14535 LOC107440409 0
LOC107454774 Ptep1.0/2.0 NW_024969938.1 201175 204201 - uncharacterized LOC107454774 aug3.g14536,aug3.g22798 LOC107454774 0
LOC107440411 Ptep1.0/2.0 NW_024969938.1 204951 217669 - DNA-directed RNA polymerase III subunit RPC4 aug3.g14536 LOC107440411 0
LOC107440408 Ptep1.0/2.0 NW_024969938.1 236505 306216 + uncharacterized LOC107440408 aug3.g14537 LOC107440408 0
LOC107442048 Ptep1.0/2.0 NW_024970088.1 415139 424639 - gastrula zinc finger protein XlCGF57.1-like aug3.g1453 LOC107442048 2e-60
LOC107440440 Ptep1.0/2.0 NW_024970287.1 162228 313934 + obscurin aug3.g14538,aug3.g10153,aug3.g11641,aug3.g21795,aug3.g27538,aug3.g12171,aug3.g5376,aug3.g73,aug3.g11444,aug3.g27910,aug3.g21863 LOC107452771,LOC107440440,LOC107436545,LOC110283129,LOC107445803 0
LOC107440444 Ptep1.0/2.0 NW_024970287.1 315480 346753 - membralin aug3.g14539 LOC107440444 0
LOC107440304 Ptep1.0/2.0 NW_024970424.1 126652 129775 + zinc finger protein 271-like aug3.g1453 LOC107440304 4e-73
LOC107437675 Ptep1.0/2.0 NW_024970672.1 126193 130557 - gastrula zinc finger protein XlCGF71.1 aug3.g1453 LOC107437675 2e-40
LOC107436578 Ptep1.0/2.0 NW_024971097.1 10868 71601 - latrophilin-like protein 1 aug3.g22932,aug3.g18986,aug3.g14532,aug3.g14533 LOC107436578 0
LOC107440407 Ptep1.0/2.0 NW_024971313.1 17804 85057 - multidrug resistance-associated protein 1 aug3.g14531 LOC107440407 0
LOC107446741 Ptep1.0/2.0 NW_024972117.1 155 25742 + zinc finger protein 850-like aug3.g1453 LOC107446741 0
LOC107446738 Ptep1.0/2.0 NW_024972277.1 6226 21553 - zinc finger protein 271 aug3.g1453 LOC107446738 8e-84
LOC107446732 Ptep1.0/2.0 NW_024973627.1 3953 5456 + zinc finger protein 568 aug3.g1453 LOC107446732 0
LOC122268443 Ptep1.0/2.0 NW_024974409.1 3414 4492 + uncharacterized LOC122268443 aug3.g14536 NA 0
16 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02