Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107451698 Ptep1.0/2.0 NW_024970096.1 586684 588248 + SCAN domain-containing protein 3 aug3.g15756,aug3.g5205,aug3.g20273,aug3.g17361,aug3.g425,aug3.g22989,aug3.g14570,aug3.g23361 LOC107451698 0
LOC107440477 Ptep1.0/2.0 NW_024970205.1 432808 467634 - inhibitor of nuclear factor kappa-B kinase subunit alpha aug3.g14578,aug3.g14579 LOC107440477 0
LOC107440476 Ptep1.0/2.0 NW_024970262.1 429888 437824 - NFX1-type zinc finger-containing protein 1 aug3.g14577 LOC107440476 0
LOC122270587 Ptep1.0/2.0 NW_024970262.1 444015 448180 + uncharacterized LOC122270587 aug3.g14578 NA 0
LOC107440471 Ptep1.0/2.0 NW_024970311.1 400957 422833 - short-chain specific acyl-CoA dehydrogenase, mitochondrial aug3.g14576 LOC107440471 0
LOC107440470 Ptep1.0/2.0 NW_024970311.1 426746 436030 + trihelix transcription factor DF1 aug3.g14575 LOC107440470 0
LOC107440469 Ptep1.0/2.0 NW_024970311.1 436859 464873 - cytosol aminopeptidase aug3.g14574,aug3.g14573 LOC107440469 0
LOC107440473 Ptep1.0/2.0 NW_024970311.1 467384 504329 - AP-5 complex subunit beta-1 aug3.g14573,aug3.g14756 LOC107440473,LOC107440699 0
LOC107440468 Ptep1.0/2.0 NW_024970311.1 504506 529131 + poly(U)-binding-splicing factor half pint aug3.g14572 LOC107440468 0
LOC107440467 Ptep1.0/2.0 NW_024970311.1 535511 601408 + lateral signaling target protein 2 homolog aug3.g14571 LOC107440467 0
LOC122271020 Ptep1.0/2.0 NW_024970517.1 94825 95649 + gastrula zinc finger protein XlCGF49.1-like aug3.g1457 NA 3e-24
LOC107446734 Ptep1.0/2.0 NW_024971315.1 63659 71470 - zinc finger protein 883 aug3.g1457 LOC107446734 0
LOC122273546 Ptep1.0/2.0 NW_024977089.1 1575 4399 - inhibitor of nuclear factor kappa-B kinase subunit alpha-like aug3.g14578 LOC107440477 0
13 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02