Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107440518 Ptep1.0/2.0 NW_024969624.1 315934 448644 - uncharacterized LOC107440518 aug3.g14606,aug3.g1909 LOC107440518 0
LOC107440516 Ptep1.0/2.0 NW_024969624.1 519315 531229 - probable 39S ribosomal protein L23, mitochondrial aug3.g14605 LOC107440516 0
LOC107440515 Ptep1.0/2.0 NW_024969624.1 531627 566333 + autophagy-related protein 16-1 aug3.g14604 LOC107440515 0
LOC107440514 Ptep1.0/2.0 NW_024969624.1 574577 586814 - hemocyanin A chain aug3.g14603,aug3.g4193,aug3.g14602 LOC107440514 0
LOC107440513 Ptep1.0/2.0 NW_024969624.1 606645 644244 + uncharacterized LOC107440513 aug3.g14600,aug3.g14601,aug3.g4194,aug3.g4195 LOC107440513 0
LOC107440520 Ptep1.0/2.0 NW_024969714.1 602307 730270 + sarcoplasmic calcium-binding protein 1-like aug3.g14608,aug3.g14607 LOC107440520 0
LOC107448710 Ptep1.0/2.0 NW_024969714.1 738144 767008 + gamma-1-syntrophin aug3.g20418,aug3.g14609 LOC107448710 0
LOC122270577 Ptep1.0/2.0 NW_024970254.1 234281 238558 - galectin-7-like aug3.g1460 NA 3e-149
LOC107446782 Ptep1.0/2.0 NW_024970254.1 244552 291323 - galectin-4 aug3.g1460 LOC107446782 0
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02