Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC110282431 Ptep1.0/2.0 NW_024969758.1 904120 904797 - tigger transposable element-derived protein 1-like aug3.g15009 LOC110282431 2e-174
LOC107446886 Ptep1.0/2.0 NW_024969797.1 1053656 1063944 + E3 ubiquitin-protein ligase RNF103 aug3.g1500 LOC107446886 0
LOC107441080 Ptep1.0/2.0 NW_024969820.1 429970 444182 + phosducin-like protein 3 aug3.g15000 LOC107441080 0
LOC107441077 Ptep1.0/2.0 NW_024969820.1 445212 517902 - regulator of nonsense transcripts 2 aug3.g15001,aug3.g15002 LOC107441077 0
LOC122269436 Ptep1.0/2.0 NW_024969820.1 549290 552108 + cilia- and flagella-associated protein 58-like aug3.g15005,aug3.g5788 NA 0
LOC107441082 Ptep1.0/2.0 NW_024970981.1 130167 131608 - tigger transposable element-derived protein 1-like aug3.g15009 LOC107441082 0
6 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02