Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107449897 Ptep1.0/2.0 NW_024969658.1 423516 435749 - E3 ubiquitin-protein ligase CCNB1IP1-like aug3.g15530 LOC107449897 0
LOC107450087 Ptep1.0/2.0 NW_024969801.1 2610852 2634387 - matrix metalloproteinase-14 aug3.g15539,aug3.g15538 LOC107450087 0
LOC107450098 Ptep1.0/2.0 NW_024969801.1 2646076 2681029 + tyrosine-protein kinase HTK16 aug3.g15537 LOC107450098 0
LOC107450102 Ptep1.0/2.0 NW_024969801.1 2687138 2720721 - thymosin beta aug3.g15536 LOC107450102 0
LOC107450086 Ptep1.0/2.0 NW_024969801.1 2728675 2729082 - uncharacterized LOC107450086 aug3.g15535 LOC107450086 0
LOC107450109 Ptep1.0/2.0 NW_024969801.1 2736860 2749590 - uncharacterized LOC107450109 aug3.g15534 LOC107450109 0
LOC107450097 Ptep1.0/2.0 NW_024969801.1 2754079 2789788 - branched-chain-amino-acid aminotransferase, cytosolic aug3.g15533 LOC107450097 0
LOC107450110 Ptep1.0/2.0 NW_024969801.1 2792658 2810662 + leucine-rich repeat and fibronectin type-III domain-containing protein 5-like aug3.g15532 LOC107450110 0
LOC107450100 Ptep1.0/2.0 NW_024969801.1 3126345 3185727 + homeobox protein DLX-6-like aug3.g15531 LOC107450100 0
LOC122271412 Ptep1.0/2.0 NW_024970783.1 152682 156275 + matrix metalloproteinase-14-like aug3.g15539 NA 0
LOC107446966 Ptep1.0/2.0 NW_024970994.1 85093 152383 - nose resistant to fluoxetine protein 6 aug3.g1553 LOC107446966 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02