Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107451352 Ptep1.0/2.0 NW_024969662.1 481365 505590 + RNA-binding protein 39 aug3.g16186,aug3.g21453 LOC107451352 0
LOC107441850 Ptep1.0/2.0 NW_024969662.1 509656 570359 - F-actin-uncapping protein LRRC16A aug3.g16187 LOC107441850 0
LOC107441854 Ptep1.0/2.0 NW_024969662.1 570544 580586 + ubiquinone biosynthesis protein COQ9, mitochondrial aug3.g16188 LOC107441854 0
LOC107441851 Ptep1.0/2.0 NW_024969662.1 588355 590266 - suppressor of cytokine signaling 5 aug3.g16189 LOC107441851 0
LOC107438901 Ptep1.0/2.0 NW_024970062.1 6014 34493 - uncharacterized LOC107438901 aug3.g13449,aug3.g19865,aug3.g19863,aug3.g19111,aug3.g15841,aug3.g21682,aug3.g22706,aug3.g10878,aug3.g17675,aug3.g17718,aug3.g16185,aug3.g14065,aug3.g10641,aug3.g17719,aug3.g12613,aug3.g27455 LOC107438901 0
LOC107447151 Ptep1.0/2.0 NW_024970350.1 133277 199070 + rho-related GTP-binding protein RhoN aug3.g1618 LOC107447151 0
LOC107441842 Ptep1.0/2.0 NW_024970351.1 267689 340941 + transcriptional regulator ERG homolog aug3.g16182,aug3.g20285 LOC107441842 0
LOC122271851 Ptep1.0/2.0 NW_024971223.1 153262 162220 + uncharacterized LOC122271851 aug3.g16184 NA 2e-139
8 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02