Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107448483 Ptep1.0/2.0 NW_024969688.1 879162 988665 - agrin aug3.g21312,aug3.g20314,aug3.g24273,aug3.g16381 LOC107448483 0
LOC122268856 Ptep1.0/2.0 NW_024969688.1 1091575 1098348 - uncharacterized LOC122268856 aug3.g16382 LOC107442136 0
LOC107442136 Ptep1.0/2.0 NW_024969688.1 1100492 1193456 - agrin aug3.g16382 LOC107442136 0
LOC107442130 Ptep1.0/2.0 NW_024969699.1 530517 536842 + uncharacterized LOC107442130 aug3.g16380 LOC107442130 0
LOC107447185 Ptep1.0/2.0 NW_024969738.1 981119 1131944 + protein Wnt-7b-like aug3.g1638 LOC107447185 0
LOC107442157 Ptep1.0/2.0 NW_024969913.1 638665 639548 + G-protein coupled receptor Mth2-like aug3.g16389,aug3.g16387,aug3.g19461 LOC107442157 0
LOC107442158 Ptep1.0/2.0 NW_024969913.1 677323 685301 + G-protein coupled receptor Mth2 aug3.g16387,aug3.g16388 LOC107442158 0
LOC107442156 Ptep1.0/2.0 NW_024969913.1 690965 698238 + uncharacterized LOC107442156 aug3.g19462,aug3.g16386 LOC107442156 0
LOC107446899 Ptep1.0/2.0 NW_024969913.1 709244 720053 + uncharacterized LOC107446899 aug3.g16386 LOC107446899 0
LOC107442160 Ptep1.0/2.0 NW_024969913.1 722996 733077 + uncharacterized LOC107442160 aug3.g16385,aug3.g12995 LOC107442160 0
LOC110282960 Ptep1.0/2.0 NW_024969913.1 737715 747229 + uncharacterized LOC110282960 aug3.g16385 LOC110282960 0
LOC107442138 Ptep1.0/2.0 NW_024970188.1 1005183 1018344 + L-carnitine dehydrogenase aug3.g16384,aug3.g20466 LOC107442138 0
LOC107442137 Ptep1.0/2.0 NW_024970188.1 1025318 1159711 - uncharacterized LOC107442137 aug3.g16383,aug3.g20942 LOC107442137 0
LOC122274004 Ptep1.0/2.0 NW_024986621.1 360 913 - agrin-like aug3.g16382 NA 0
14 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02