Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107436398 Ptep1.0/2.0 NW_024969724.1 8661 44794 + biorientation of chromosomes in cell division protein 1-like 1 aug3.g11517,aug3.g16506 LOC107436398,LOC110282453 0
LOC107447216 Ptep1.0/2.0 NW_024970321.1 327346 337649 - uncharacterized LOC107447216 aug3.g1649,aug3.g1650 LOC107447216 0
LOC107452456 Ptep1.0/2.0 NW_024970475.1 327327 338133 + gastrula zinc finger protein XlCGF7.1 aug3.g10035,aug3.g22962,aug3.g21471,aug3.g17555,aug3.g27741,aug3.g23456,aug3.g5478,aug3.g16507,aug3.g14632,aug3.g15597 LOC107452456 0
LOC122271105 Ptep1.0/2.0 NW_024970568.1 7942 10674 - uncharacterized LOC122271105 aug3.g16505 NA 5e-60
LOC107442316 Ptep1.0/2.0 NW_024970568.1 17738 27549 - uncharacterized LOC107442316 aug3.g16505 LOC107442316 0
LOC107442317 Ptep1.0/2.0 NW_024970568.1 29334 42193 - low density lipoprotein receptor adapter protein 1-A aug3.g16504 LOC107442317 0
LOC107442312 Ptep1.0/2.0 NW_024970568.1 42294 130228 + serine-protein kinase ATM aug3.g16503 LOC107442312 0
LOC107442315 Ptep1.0/2.0 NW_024970568.1 133047 139074 - superoxide dismutase [Mn], mitochondrial aug3.g16502 LOC107442315 0
LOC107442313 Ptep1.0/2.0 NW_024970568.1 139211 171598 + pre-mRNA-splicing regulator WTAP aug3.g16501 LOC107442313 0
LOC107442310 Ptep1.0/2.0 NW_024970568.1 175194 207700 - RNA cytidine acetyltransferase aug3.g16499,aug3.g16500,aug3.g20984 LOC107442310 0
LOC107442319 Ptep1.0/2.0 NW_024972612.1 6384 14320 + uncharacterized LOC107442319 aug3.g19346,aug3.g16509 LOC107442319 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02