Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107442360 Ptep1.0/2.0 NW_024969674.1 1188276 1253858 - uncharacterized LOC107442360 aug3.g16546 LOC107442360 0
LOC107442359 Ptep1.0/2.0 NW_024969674.1 1316999 1366143 - ras-related protein Rab-22A-like aug3.g16547 LOC107442359 0
LOC107442362 Ptep1.0/2.0 NW_024969674.1 1387292 1419770 + rho guanine nucleotide exchange factor 25 aug3.g22556,aug3.g16548 LOC107442362,LOC107450107 0
LOC107447920 Ptep1.0/2.0 NW_024969982.1 61104 139606 - fatty acid synthase aug3.g20063,aug3.g3910,aug3.g1654,aug3.g8845 LOC107447920 0
LOC107449459 Ptep1.0/2.0 NW_024970184.1 230143 273485 + trichoplein keratin filament-binding protein aug3.g20772,aug3.g19694,aug3.g16540 LOC107449459 0
LOC122268367 Ptep1.0/2.0 NW_024970321.1 425011 441464 - fatty acid synthase-like aug3.g1654 LOC107447203 0
LOC122270698 Ptep1.0/2.0 NW_024970321.1 441473 460073 - fatty acid synthase-like aug3.g1654 LOC107447203 0
LOC107442356 Ptep1.0/2.0 NW_024970530.1 294116 309019 + putative inorganic phosphate cotransporter aug3.g16542 LOC107442356 0
LOC107442358 Ptep1.0/2.0 NW_024970735.1 101797 114605 + opsin Rh4-like aug3.g16545 LOC107442358 0
LOC122272292 Ptep1.0/2.0 NW_024971740.1 94634 97249 + uncharacterized LOC122272292 aug3.g16541 NA 3e-77
LOC107442357 Ptep1.0/2.0 NW_024971770.1 19527 23668 - lipase member H-A-like aug3.g16543 LOC107442357 0
LOC107436828 Ptep1.0/2.0 NW_024972021.1 25777 39534 - lipase member H-like aug3.g11864,aug3.g6184,aug3.g16543 LOC107436828 0
LOC122273423 Ptep1.0/2.0 NW_024975990.1 590 4906 - putative inorganic phosphate cotransporter aug3.g16542 LOC107442356 0
13 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02