Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107436606 Ptep1.0/2.0 NW_024969628.1 553791 910333 + hemicentin-1 aug3.g9017,aug3.g16559,aug3.g26056 LOC107436606 0
LOC107442378 Ptep1.0/2.0 NW_024969741.1 821491 835671 + transcription factor HES-4-B aug3.g16556 LOC107442378 0
LOC107442376 Ptep1.0/2.0 NW_024969741.1 889883 934119 + beta,beta-carotene 15,15'-dioxygenase aug3.g16558,aug3.g11224,aug3.g24409 LOC107442376 0
LOC122269255 Ptep1.0/2.0 NW_024969777.1 5348 10611 - fatty acid synthase-like aug3.g1655 NA 0
LOC107447203 Ptep1.0/2.0 NW_024969777.1 17879 51497 - fatty acid synthase aug3.g1655 LOC107447203 0
LOC107447206 Ptep1.0/2.0 NW_024969777.1 60768 80633 - cytochrome P450 4V2 aug3.g1655 LOC107447206 0
LOC122270895 Ptep1.0/2.0 NW_024970433.1 84966 85523 + uncharacterized LOC122270895 aug3.g16550 NA 0
LOC107442365 Ptep1.0/2.0 NW_024970544.1 278902 300039 + diphthine--ammonia ligase aug3.g16551 LOC107442365 0
LOC107442369 Ptep1.0/2.0 NW_024971040.1 209019 228852 - tumor suppressor candidate 3 aug3.g16554,aug3.g12375 LOC107442369 0
LOC107442370 Ptep1.0/2.0 NW_024971040.1 229134 236616 + polyprenol reductase aug3.g16553 LOC107442370 0
LOC107445074 Ptep1.0/2.0 NW_024971102.1 678 1433 + histone-lysine N-methyltransferase SETMAR-like aug3.g18284,aug3.g16550,aug3.g22559,aug3.g835,aug3.g4798,aug3.g2774,aug3.g12550 LOC107445074 0
LOC107442374 Ptep1.0/2.0 NW_024972407.1 9343 23215 - SEC14-like protein 3 aug3.g16902,aug3.g16555 LOC107442374 0
LOC122273087 Ptep1.0/2.0 NW_024974054.1 2113 8331 - transmembrane protein KIAA1109-like aug3.g16552 LOC107451210 0
13 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02