Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107442456 Ptep1.0/2.0 NW_024969670.1 833212 956826 + calcitonin receptor aug3.g16593 LOC107442456 0
LOC107442457 Ptep1.0/2.0 NW_024969670.1 966368 976251 + uncharacterized LOC107442457 aug3.g16593 LOC107442457 2e-154
LOC107447235 Ptep1.0/2.0 NW_024970121.1 132573 151563 - tRNA:m(4)X modification enzyme TRM13 homolog aug3.g1659 LOC107447235 0
LOC107442454 Ptep1.0/2.0 NW_024970135.1 145941 371064 - endothelin-converting enzyme 1 aug3.g16591,aug3.g19057,aug3.g16590 LOC107442452,LOC107442454,LOC107446272 0
LOC122270949 Ptep1.0/2.0 NW_024970467.1 73 1683 + uncharacterized LOC122270949 aug3.g16595 NA 0
LOC107449093 Ptep1.0/2.0 NW_024970541.1 301591 303510 + uncharacterized LOC107449093 aug3.g2588,aug3.g21633,aug3.g21050,aug3.g16592,aug3.g6842 LOC107449093 0
LOC122272111 Ptep1.0/2.0 NW_024971506.1 6001 7188 + protein maternal effect lethal 26-like aug3.g16598 NA 0
LOC122272112 Ptep1.0/2.0 NW_024971506.1 21356 22462 + kelch-like ECH-associated protein 1 aug3.g16596 NA 0
LOC107443680 Ptep1.0/2.0 NW_024971882.1 15877 19869 - uncharacterized LOC107443680 aug3.g16599 LOC107443680 0
LOC107442463 Ptep1.0/2.0 NW_024971882.1 20555 32807 - uncharacterized LOC107442463 aug3.g16599,aug3.g24554,aug3.g24450 LOC107442463 0
LOC107447196 Ptep1.0/2.0 NW_024973544.1 3753 4694 - uncharacterized LOC107447196 aug3.g16595 LOC107447196 9e-159
LOC122273972 Ptep1.0/2.0 NW_024985340.1 150 1167 - uncharacterized LOC122273972 aug3.g16595 NA 0
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02