Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107437449 Ptep1.0/2.0 NW_024969617.1 93580 94352 - uncharacterized LOC107437449 aug3.g16731 LOC107437449 2e-164
LOC107453568 Ptep1.0/2.0 NW_024969617.1 97247 97944 - uncharacterized LOC107453568 aug3.g16731 LOC107453568 8e-178
LOC122269495 Ptep1.0/2.0 NW_024969840.1 20462 21928 - uncharacterized LOC122269495 aug3.g16731 NA 0
LOC107448722 Ptep1.0/2.0 NW_024969909.1 420449 456551 + mitochondrial GTPase 1-like aug3.g1673 LOC107447265,LOC107448722 9e-154
LOC122271980 Ptep1.0/2.0 NW_024971367.1 66916 68940 + uncharacterized LOC122271980 aug3.g16731 NA 0
LOC107442656 Ptep1.0/2.0 NW_024971367.1 83643 100344 + fasciclin-2-like aug3.g16731 LOC107442656 2e-159
LOC122271979 Ptep1.0/2.0 NW_024971367.1 101574 113739 + neural cell adhesion molecule 1-like aug3.g16733 LOC107442656 0
LOC107442848 Ptep1.0/2.0 NW_024972274.1 24952 27219 + uncharacterized LOC107442848 aug3.g17371,aug3.g15852,aug3.g16734 LOC107442848 0
LOC122274060 Ptep1.0/2.0 NW_024989819.1 209 551 - secreted RxLR effector protein 161-like aug3.g16736 NA 4e-153
LOC122268486 Ptep1.0/2.0 NW_024994304.1 166 752 - uncharacterized LOC122268486 aug3.g16731 NA 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02