Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122269338 Ptep1.0/2.0 NW_024969791.1 272650 273021 + uncharacterized LOC122269338 aug3.g16367,aug3.g26851,aug3.g18653,aug3.g15757,aug3.g14342,aug3.g23728,aug3.g11654,aug3.g25539,aug3.g17572,aug3.g12129,aug3.g16760,aug3.g10418,aug3.g1935 NA 0
LOC107447266 Ptep1.0/2.0 NW_024969909.1 725047 726915 + G-protein coupled receptor dmsr-1-like aug3.g1676 LOC107447266 0
LOC107442709 Ptep1.0/2.0 NW_024970333.1 401614 403339 - speckle-type POZ protein-like aug3.g16777,aug3.g16774,aug3.g16775,aug3.g20657,aug3.g16770,aug3.g20659,aug3.g20658,aug3.g16772,aug3.g16767,aug3.g16768 LOC107442709 0
LOC107436443 Ptep1.0/2.0 NW_024970916.1 60984 86261 - pollen-specific leucine-rich repeat extensin-like protein 1 aug3.g11571,aug3.g11210,aug3.g26088,aug3.g16761,aug3.g25216,aug3.g18234 LOC107436443 0
LOC107442707 Ptep1.0/2.0 NW_024970962.1 13712 53081 + putative ammonium transporter 3 aug3.g16762,aug3.g22810,aug3.g19740 LOC107442707 0
LOC107456041 Ptep1.0/2.0 NW_024970962.1 62715 74403 + putative ammonium transporter 3 aug3.g16763 LOC107456041 0
LOC107442710 Ptep1.0/2.0 NW_024971000.1 53212 88640 + BTB/POZ and MATH domain-containing protein 3-like aug3.g16769,aug3.g16771,aug3.g5263 LOC107442710 0
LOC122273244 Ptep1.0/2.0 NW_024974915.1 442 5675 + putative ammonium transporter 3 aug3.g16762 NA 0
LOC107452740 Ptep1.0/2.0 NW_024977919.1 1994 2892 + speckle-type POZ protein B-like aug3.g4953,aug3.g21009,aug3.g16764 LOC107452740 0
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02