Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122270730 Ptep1.0/2.0 NW_024969631.1 5043 12402 - 5'-nucleotidase domain-containing protein 3-like aug3.g16810 LOC107442765 0
LOC107442765 Ptep1.0/2.0 NW_024970048.1 2272 26181 + 5'-nucleotidase domain-containing protein 3 aug3.g16810,aug3.g16811 LOC107442765 0
LOC107442780 Ptep1.0/2.0 NW_024970054.1 580480 647672 + zinc finger FYVE domain-containing protein 26 aug3.g16818,aug3.g16820,aug3.g16819,aug3.g21983 LOC107442780 0
LOC107442786 Ptep1.0/2.0 NW_024970054.1 652235 653858 - G patch domain and ankyrin repeat-containing protein 1 homolog aug3.g16817 LOC107442786 0
LOC107442785 Ptep1.0/2.0 NW_024970054.1 654094 663815 + p53 and DNA damage-regulated protein 1 aug3.g16816 LOC107442785 0
LOC107442784 Ptep1.0/2.0 NW_024970054.1 663522 674429 - decapping and exoribonuclease protein aug3.g16815 LOC107442784 0
LOC107442787 Ptep1.0/2.0 NW_024970054.1 674574 693033 + CDAN1-interacting nuclease 1 aug3.g16814 LOC107442787 0
LOC107442779 Ptep1.0/2.0 NW_024970054.1 693948 698475 - putative uncharacterized protein DDB_G0282133 aug3.g16813 LOC107442779 0
LOC107442783 Ptep1.0/2.0 NW_024970054.1 706866 727236 - embryonic polarity protein dorsal aug3.g16812 LOC107442783 0
LOC107447270 Ptep1.0/2.0 NW_024971528.1 23786 25062 - uncharacterized LOC107447270 aug3.g1681 LOC107447270 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02