Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268999 Ptep1.0/2.0 NW_024969715.1 1285781 1290764 + uncharacterized LOC122268999 aug3.g17277 NA 0.00000000001
LOC107447387 Ptep1.0/2.0 NW_024969731.1 583042 751697 - hormone receptor 4 aug3.g1727 LOC107447387 0
LOC107438293 Ptep1.0/2.0 NW_024969904.1 680357 691114 - spindle and kinetochore-associated protein 1 aug3.g26457,aug3.g17278 LOC107438293 0
LOC107443506 Ptep1.0/2.0 NW_024970225.1 413890 415559 - zinc finger protein 585B-like aug3.g17273 LOC107443506 0
LOC107448842 Ptep1.0/2.0 NW_024970225.1 426380 427471 + zinc finger protein 525 aug3.g17272,aug3.g10405 LOC107448842,LOC107443505 0
LOC107443508 Ptep1.0/2.0 NW_024970225.1 434612 440467 + 28S ribosomal protein S17, mitochondrial aug3.g17271 LOC107443508 1e-161
LOC107443507 Ptep1.0/2.0 NW_024970225.1 445986 448177 - gastrula zinc finger protein XlCGF7.1 aug3.g17270 LOC107443507 0
LOC107445918 Ptep1.0/2.0 NW_024970609.1 53247 260507 - hypoxia-inducible factor 1-alpha aug3.g99,aug3.g17276 LOC107445918 0
LOC122272247 Ptep1.0/2.0 NW_024971686.1 16876 51403 + uncharacterized LOC122272247 aug3.g17276 LOC107443515 9e-130
LOC107443509 Ptep1.0/2.0 NW_024971855.1 11216 46062 + adhesive plaque matrix protein 2 aug3.g17274 LOC107443509 0
LOC107443515 Ptep1.0/2.0 NW_024972486.1 4559 20081 + putative uncharacterized protein DDB_G0282129 aug3.g17277,aug3.g99,aug3.g21144 LOC107443515 0
LOC122273636 Ptep1.0/2.0 NW_024977980.1 7 3299 - uncharacterized LOC122273636 aug3.g17274 LOC107443509 2e-132
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02