Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107443647 Ptep1.0/2.0 NW_024969633.1 2459596 2538273 + plexin-B aug3.g17369 LOC107443647 0
LOC107443648 Ptep1.0/2.0 NW_024969633.1 2511308 2554621 - uncharacterized LOC107443648 aug3.g17369 LOC107443648 3e-64
LOC107443649 Ptep1.0/2.0 NW_024969633.1 2570132 2593247 - syntaxin aug3.g17367 LOC107443649 0
LOC107443650 Ptep1.0/2.0 NW_024969633.1 2605508 2624294 - zinc finger protein SNAI2 aug3.g17366 LOC107443650 0
LOC107447379 Ptep1.0/2.0 NW_024969731.1 896483 915715 + ribosome biogenesis regulatory protein homolog aug3.g1736 LOC107447379 0
LOC107443645 Ptep1.0/2.0 NW_024969931.1 302614 394136 - zinc finger protein 672 aug3.g8406,aug3.g17363 LOC107443645 0
LOC107443646 Ptep1.0/2.0 NW_024969931.1 487858 513037 + uncharacterized LOC107443646 aug3.g17365 LOC107443646 0
LOC107451698 Ptep1.0/2.0 NW_024970096.1 586684 588248 + SCAN domain-containing protein 3 aug3.g15756,aug3.g5205,aug3.g20273,aug3.g17361,aug3.g425,aug3.g22989,aug3.g14570,aug3.g23361 LOC107451698 0
LOC107443644 Ptep1.0/2.0 NW_024970151.1 7844 14415 + uncharacterized LOC107443644 aug3.g17362 LOC107443644 0
LOC122268400 Ptep1.0/2.0 NW_024971179.1 157728 159590 + SCAN domain-containing protein 3-like aug3.g15756,aug3.g18180,aug3.g1799,aug3.g17360 NA 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02