Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107447386 Ptep1.0/2.0 NW_024969731.1 949472 985128 - exportin-6 aug3.g1739 LOC107447386 0
LOC122268341 Ptep1.0/2.0 NW_024969835.1 49818 56355 + uncharacterized LOC122268341 aug3.g17396 LOC107443681 3e-81
LOC107443681 Ptep1.0/2.0 NW_024969835.1 57611 64148 + U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein aug3.g17396 LOC107443681 0
LOC107443686 Ptep1.0/2.0 NW_024969835.1 64547 94996 - glutamine--tRNA ligase aug3.g17397 LOC107443686 0
LOC107443687 Ptep1.0/2.0 NW_024969835.1 98970 99802 - histone H2B aug3.g17398 LOC107443687 0
LOC107443684 Ptep1.0/2.0 NW_024969835.1 111812 112435 - histone H2A aug3.g17399 LOC107443684 0
LOC107438312 Ptep1.0/2.0 NW_024969924.1 833245 834705 - uncharacterized LOC107438312 aug3.g12980,aug3.g17372,aug3.g17392 LOC107438312 0
LOC107443676 Ptep1.0/2.0 NW_024971301.1 1950 64733 + uncharacterized LOC107443676 aug3.g17394,aug3.g17395,aug3.g9111,aug3.g17393 LOC107443677,LOC107443678,LOC107443676 0
LOC107443679 Ptep1.0/2.0 NW_024971301.1 72998 87770 + NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 aug3.g17390 LOC107443679 0
LOC107443682 Ptep1.0/2.0 NW_024972509.1 1422 21927 - uncharacterized LOC107443682 aug3.g17396 LOC107443682 4e-66
LOC122273013 Ptep1.0/2.0 NW_024973709.1 3558 7902 + uncharacterized LOC122273013 aug3.g17395 NA 1e-35
LOC122273014 Ptep1.0/2.0 NW_024973711.1 2639 5716 + transcription-associated protein 1-like aug3.g17394 NA 9e-82
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02