Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107447543 Ptep1.0/2.0 NW_024970034.1 435338 448605 - vesicle-associated membrane protein 7 aug3.g21880,aug3.g1804 LOC107447543 0
LOC107444720 Ptep1.0/2.0 NW_024970432.1 212215 227946 - uncharacterized LOC107444720 aug3.g18049 LOC107444720 0
LOC107444714 Ptep1.0/2.0 NW_024971154.1 68655 89414 + TD and POZ domain-containing protein 1-like aug3.g18040 LOC107444714 0
LOC122271798 Ptep1.0/2.0 NW_024971154.1 95698 97422 - uncharacterized LOC122271798 aug3.g18041 NA 0
LOC107444715 Ptep1.0/2.0 NW_024971154.1 100336 107001 + uncharacterized LOC107444715 aug3.g18042 LOC107444715 0
LOC107444713 Ptep1.0/2.0 NW_024971154.1 112887 116545 + TD and POZ domain-containing protein 4 aug3.g18044 LOC107444713 0
LOC107444719 Ptep1.0/2.0 NW_024971154.1 120995 125432 - uncharacterized LOC107444719 aug3.g18045 LOC107444719 0
LOC107441320 Ptep1.0/2.0 NW_024971506.1 45733 64094 + uncharacterized LOC107441320 aug3.g15819,aug3.g15818,aug3.g18045 LOC107441320 0
LOC122272833 Ptep1.0/2.0 NW_024972988.1 4590 5087 + uncharacterized LOC122272833 aug3.g21195,aug3.g18030,aug3.g1775,aug3.g3151,aug3.g18048,aug3.g11229,aug3.g13917,aug3.g23670,aug3.g101,aug3.g5304,aug3.g2007,aug3.g4720,aug3.g1160,aug3.g18760,aug3.g4669 NA 0
LOC122273652 Ptep1.0/2.0 NW_024978144.1 1043 2632 + TD and POZ domain-containing protein 4-like aug3.g18044 LOC107444713 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02