Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107443006 Ptep1.0/2.0 NW_024969891.1 635818 654564 - tigger transposable element-derived protein 4-like aug3.g9934,aug3.g10105,aug3.g18192,aug3.g6186,aug3.g17788,aug3.g9969,aug3.g192,aug3.g12457,aug3.g22897,aug3.g1740,aug3.g20926,aug3.g19047,aug3.g14633,aug3.g5371,aug3.g25913,aug3.g21109,aug3.g9935,aug3.g1678,aug3.g15883,aug3.g21072,aug3.g10535,aug3.g13475, LOC107443006 0
LOC122270060 Ptep1.0/2.0 NW_024970033.1 732 5773 + cuticle protein 14-like aug3.g18198 NA 3e-128
LOC122270693 Ptep1.0/2.0 NW_024970320.1 829773 870777 + uncharacterized LOC122270693 aug3.g9818,aug3.g18193,aug3.g15566,aug3.g26714,aug3.g1097,aug3.g19330,aug3.g19261,aug3.g22403,aug3.g16329,aug3.g7403,aug3.g24358,aug3.g9152,aug3.g19188,aug3.g11063,aug3.g8790,aug3.g25600,aug3.g21923,aug3.g27165,aug3.g17253,aug3.g25298 NA 0
LOC122270828 Ptep1.0/2.0 NW_024970391.1 408145 415492 - phosphotriesterase-related protein-like aug3.g1819 LOC107447587 0
LOC107444914 Ptep1.0/2.0 NW_024970955.1 106771 168460 - tachykinin-like peptides receptor 86C aug3.g18190 LOC107444914 0
LOC107444918 Ptep1.0/2.0 NW_024971364.1 55413 57875 + glycine-rich cell wall structural protein-like aug3.g18198 LOC107444918 0
LOC107444921 Ptep1.0/2.0 NW_024971364.1 66508 71241 - glycine-rich cell wall structural protein-like aug3.g18199 LOC107444921 0
LOC107447587 Ptep1.0/2.0 NW_024973894.1 421 8287 + phosphotriesterase-related protein aug3.g1819 LOC107447587 0
8 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02