Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107447692 Ptep1.0/2.0 NW_024969709.1 110752 122189 + mediator of RNA polymerase II transcription subunit 15 aug3.g1865 LOC107447692 0
LOC122269338 Ptep1.0/2.0 NW_024969791.1 272650 273021 + uncharacterized LOC122269338 aug3.g16367,aug3.g26851,aug3.g18653,aug3.g15757,aug3.g14342,aug3.g23728,aug3.g11654,aug3.g25539,aug3.g17572,aug3.g12129,aug3.g16760,aug3.g10418,aug3.g1935 NA 0
LOC122270800 Ptep1.0/2.0 NW_024970375.1 246780 252436 - uncharacterized LOC122270800 aug3.g18659 NA 0
LOC107445622 Ptep1.0/2.0 NW_024970919.1 869 10595 + uncharacterized LOC107445622 aug3.g18650 LOC107445622 0
LOC107445624 Ptep1.0/2.0 NW_024970919.1 16977 35936 + transcription factor SOX-9 aug3.g18651 LOC107445624 0
LOC107445623 Ptep1.0/2.0 NW_024970919.1 145364 175395 - TBC1 domain family member 9 aug3.g18652 LOC107445623 0
LOC107446963 Ptep1.0/2.0 NW_024970994.1 20502 41530 + beta-ureidopropionase aug3.g1556,aug3.g18654 LOC107446963 0
LOC107447513 Ptep1.0/2.0 NW_024971284.1 135325 144371 + uncharacterized transmembrane protein DDB_G0281039-like aug3.g25670,aug3.g18658,aug3.g18657,aug3.g25669,aug3.g5199 LOC107447513 0
LOC107445641 Ptep1.0/2.0 NW_024971762.1 30218 43028 + pseudogene aug3.g18654 LOC107445641 2e-120
LOC107442974 Ptep1.0/2.0 NW_024971897.1 21572 43559 - uncharacterized LOC107442974 aug3.g10981,aug3.g16963,aug3.g18656,aug3.g19563,aug3.g22264,aug3.g20077 LOC107442974 0
LOC122272602 Ptep1.0/2.0 NW_024972341.1 6486 6867 + uncharacterized LOC122272602 aug3.g18656 NA 0
LOC122272626 Ptep1.0/2.0 NW_024972390.1 554 8126 + uncharacterized LOC122272626 aug3.g18656 NA 0
LOC107447130 Ptep1.0/2.0 NW_024972390.1 17625 23715 + zinc finger CCCH domain-containing protein 14-like aug3.g18656 LOC107447130,LOC107445644 0
LOC122273107 Ptep1.0/2.0 NW_024974159.1 2278 6344 - pseudogene aug3.g18654 NA 3e-105
LOC122273235 Ptep1.0/2.0 NW_024974870.1 3108 6628 - beta-ureidopropionase-like aug3.g18654 NA 2e-146
LOC122273373 Ptep1.0/2.0 NW_024975690.1 2061 2442 + uncharacterized LOC122273373 aug3.g18656 NA 0
16 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02