Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122270904 Ptep1.0/2.0 NW_024969634.1 2457840 2458683 + pseudogene aug3.g18785 NA 0
LOC107447710 Ptep1.0/2.0 NW_024969693.1 1333316 1350459 + queuosine salvage protein aug3.g1878 LOC107447710 0
LOC107445831 Ptep1.0/2.0 NW_024969726.1 2052659 2326217 - hemicentin-2 aug3.g18780,aug3.g6666 LOC107445831 0
LOC107438137 Ptep1.0/2.0 NW_024969793.1 699616 824568 + formin-J-like aug3.g26411,aug3.g15945,aug3.g16965,aug3.g18789,aug3.g3845,aug3.g20638,aug3.g27431,aug3.g11569,aug3.g26749,aug3.g13556,aug3.g568,aug3.g15812,aug3.g22828,aug3.g12149,aug3.g5637,aug3.g892,aug3.g8296,aug3.g18962,aug3.g6082,aug3.g24558,aug3.g9808,aug3.g2790,a LOC107438137 0
LOC122269840 Ptep1.0/2.0 NW_024969950.1 465206 466123 + zinc finger MYM-type protein 6-like aug3.g18783 NA 0
LOC107446181 Ptep1.0/2.0 NW_024970024.1 386928 404794 + histidine-rich glycoprotein-like aug3.g1261,aug3.g18782,aug3.g2462 LOC107445835,LOC107451777,LOC107446181 0
LOC122270049 Ptep1.0/2.0 NW_024970029.1 715144 715879 - protein GVQW3-like aug3.g18785 NA 0
LOC122270048 Ptep1.0/2.0 NW_024970029.1 716397 731824 + nose resistant to fluoxetine protein 6-like aug3.g18784 NA 0
LOC107453817 Ptep1.0/2.0 NW_024970757.1 204871 208602 + uncharacterized LOC107453817 aug3.g18787,aug3.g5803 LOC107453817 0
LOC122273977 Ptep1.0/2.0 NW_024985638.1 277 699 - zinc finger MYM-type protein 6-like aug3.g18783 NA 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02