Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107447702 Ptep1.0/2.0 NW_024969693.1 1278037 1299287 + xaa-Pro dipeptidase aug3.g1880,aug3.g1881 LOC107447702 0
LOC107445130 Ptep1.0/2.0 NW_024969711.1 236356 249820 - progranulin aug3.g21854,aug3.g20009,aug3.g20010,aug3.g6402,aug3.g20007,aug3.g20012,aug3.g18324,aug3.g18801 LOC107445130 0
LOC107445860 Ptep1.0/2.0 NW_024969738.1 1191407 1192008 - progranulin-like aug3.g18801 LOC107445860 0
LOC122269188 Ptep1.0/2.0 NW_024969755.1 1320736 1324718 - uncharacterized LOC122269188 aug3.g1648,aug3.g18802 NA 0
LOC107451438 Ptep1.0/2.0 NW_024969892.1 963169 1050285 + afadin aug3.g4011,aug3.g19481,aug3.g18809 LOC110283474,LOC107451438 0
LOC122270349 Ptep1.0/2.0 NW_024970145.1 444407 445421 - uncharacterized LOC122270349 aug3.g18802 NA 0
LOC107445858 Ptep1.0/2.0 NW_024970255.1 410802 423177 + manganese-dependent ADP-ribose/CDP-alcohol diphosphatase aug3.g18804 LOC107445858 0
LOC107445861 Ptep1.0/2.0 NW_024970255.1 429324 438004 - chromobox protein homolog 3 aug3.g18803 LOC107445861 0
LOC122271665 Ptep1.0/2.0 NW_024971035.1 7253 13358 + neural cell adhesion molecule L1-like protein aug3.g18800 NA 0
LOC107450769 Ptep1.0/2.0 NW_024971247.1 9686 22359 + uncharacterized LOC107450769 aug3.g18807 LOC107450769 2e-29
LOC107445865 Ptep1.0/2.0 NW_024972162.1 7673 10638 + afadin-like aug3.g18808 LOC107445865 0
LOC107445862 Ptep1.0/2.0 NW_024972315.1 8573 9883 - uncharacterized LOC107445862 aug3.g18806,aug3.g3174 LOC107445862 0
LOC107445864 Ptep1.0/2.0 NW_024973251.1 3031 7593 + afadin aug3.g18808,aug3.g4011 LOC110282547,LOC107445864 4e-145
LOC122273736 Ptep1.0/2.0 NW_024979286.1 882 2743 - afadin-like aug3.g18809 NA 0
LOC122273750 Ptep1.0/2.0 NW_024979626.1 724 3005 + pseudogene aug3.g18802 NA 0
15 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02