Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107446204 Ptep1.0/2.0 NW_024969617.1 1582980 1602354 + uncharacterized LOC107446204 aug3.g19006,aug3.g19022,aug3.g19019,aug3.g3094,aug3.g3095,aug3.g24938,aug3.g16155,aug3.g19021,aug3.g13664,aug3.g20647,aug3.g16154,aug3.g3097,aug3.g13663,aug3.g3093 LOC107446204 0
LOC110282974 Ptep1.0/2.0 NW_024969926.1 897461 902918 - uncharacterized LOC110282974 aug3.g1901 LOC110282974 0
LOC107446216 Ptep1.0/2.0 NW_024969938.1 32968 121604 - complement C3 aug3.g19014,aug3.g19571 LOC107446216 0
LOC107446218 Ptep1.0/2.0 NW_024969938.1 126410 141568 - ADP-ribosylation factor 4 aug3.g19015 LOC107446218 0
LOC107446215 Ptep1.0/2.0 NW_024969938.1 146171 153791 - U24-ctenitoxin-Pn1a aug3.g19016 LOC107446215 3e-168
LOC107446217 Ptep1.0/2.0 NW_024969938.1 162893 181637 + NEDD8-activating enzyme E1 catalytic subunit aug3.g19017,aug3.g14534 LOC107446217 0
LOC122271963 Ptep1.0/2.0 NW_024971343.1 12898 18987 + uncharacterized LOC122271963 aug3.g1901 NA 9e-42
LOC107446225 Ptep1.0/2.0 NW_024971696.1 30906 40621 - putative ankyrin repeat protein RF_0381 aug3.g19019 LOC107446225 0
LOC122273743 Ptep1.0/2.0 NW_024979442.1 3 3294 + uncharacterized LOC122273743 aug3.g19017 NA 2e-95
LOC122268637 Ptep1.0/2.0 NW_025011245.1 345 816 + uncharacterized LOC122268637 aug3.g1901 NA 1e-63
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02