Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC110282728 Ptep1.0/2.0 NW_024969691.1 60146 61732 - uncharacterized LOC110282728 aug3.g25,aug3.g3003,aug3.g10021,aug3.g13033,aug3.g3902,aug3.g481,aug3.g948,aug3.g4612,aug3.g4299,aug3.g19320,aug3.g21965,aug3.g24022,aug3.g5812,aug3.g25946 LOC110282728 0
LOC122269327 Ptep1.0/2.0 NW_024969790.1 91036 100144 - zinc finger protein 600-like aug3.g19320 NA 0
LOC122269339 Ptep1.0/2.0 NW_024969791.1 436603 446510 - uncharacterized LOC122269339 aug3.g1932 NA 0
LOC107447830 Ptep1.0/2.0 NW_024969791.1 451068 458509 - cytoplasmic dynein 1 light intermediate chain 2 aug3.g1931,aug3.g1932 LOC107447830 0
LOC107451125 Ptep1.0/2.0 NW_024969972.1 88565 89872 + uncharacterized protein F54H12.2-like aug3.g3816,aug3.g19322 LOC107451125 0
LOC107440648 Ptep1.0/2.0 NW_024971474.1 84750 90274 + putative protein TPRXL aug3.g19327,aug3.g14708,aug3.g24465 LOC107440648 0
LOC107446642 Ptep1.0/2.0 NW_024971589.1 4902 15334 + exonuclease 1 aug3.g19327,aug3.g15961 LOC107446642 0
LOC122272174 Ptep1.0/2.0 NW_024971589.1 21703 27638 - uncharacterized LOC122272174 aug3.g19328 NA 0
LOC122272208 Ptep1.0/2.0 NW_024971632.1 41687 59412 + guanylate cyclase 32E-like aug3.g19329 NA 0
LOC122273338 Ptep1.0/2.0 NW_024975571.1 1878 5463 - uncharacterized LOC122273338 aug3.g19326 NA 1e-157
LOC107446643 Ptep1.0/2.0 NW_025008623.1 11359 57134 + guanylate cyclase 32E-like aug3.g19329,aug3.g20163 LOC107446643 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02