Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107453154 Ptep1.0/2.0 NW_024969711.1 1136711 1157585 - cytochrome P450 2J4 aug3.g5257,aug3.g19344,aug3.g5258 LOC107453154 0
LOC107455862 Ptep1.0/2.0 NW_024969764.1 437310 438215 - uncharacterized LOC107455862 aug3.g25146,aug3.g19343,aug3.g16463,aug3.g14400,aug3.g4758,aug3.g3610,aug3.g22235,aug3.g11358,aug3.g1785,aug3.g25419 LOC107455862 0
LOC107447826 Ptep1.0/2.0 NW_024969791.1 299362 423906 + serine-rich adhesin for platelets aug3.g1934,aug3.g24931 LOC107447826 0
LOC107446751 Ptep1.0/2.0 NW_024969857.1 286873 346566 - ATP-dependent RNA helicase A aug3.g19348 LOC107446751 0
LOC107446750 Ptep1.0/2.0 NW_024969857.1 346616 348835 + DNA-directed RNA polymerase I subunit RPA49 aug3.g19349 LOC107446750 0
LOC122270272 Ptep1.0/2.0 NW_024970112.1 1216674 1217867 - uncharacterized LOC122270272 aug3.g6276,aug3.g8786,aug3.g14191,aug3.g22774,aug3.g7314,aug3.g20021,aug3.g19342,aug3.g20731,aug3.g21771,aug3.g5270,aug3.g15965,aug3.g8785 NA 0
LOC107446719 Ptep1.0/2.0 NW_024970216.1 16214 23121 + mitochondrial inner membrane protease subunit 1 aug3.g19341 LOC107446719 0
LOC107446717 Ptep1.0/2.0 NW_024970216.1 31227 40484 - uncharacterized LOC107446717 aug3.g19340 LOC107446717 0
LOC107436221 Ptep1.0/2.0 NW_024970560.1 262691 270018 + beta-secretase 1 aug3.g11399,aug3.g19346 LOC107436221 0
LOC107451816 Ptep1.0/2.0 NW_024971618.1 56480 77013 + uncharacterized LOC107451816 aug3.g19346,aug3.g8217 LOC107451816 2e-145
LOC107446727 Ptep1.0/2.0 NW_024971629.1 8495 60271 + phosphatidylinositol-binding clathrin assembly protein LAP aug3.g19346 LOC107446727 0
LOC122272462 Ptep1.0/2.0 NW_024972055.1 4685 17166 + uncharacterized LOC122272462 aug3.g19346 NA 7e-93
LOC107442319 Ptep1.0/2.0 NW_024972612.1 6384 14320 + uncharacterized LOC107442319 aug3.g19346,aug3.g16509 LOC107442319 0
LOC107447663 Ptep1.0/2.0 NW_024973013.1 5194 8558 - phosphatidylinositol-binding clathrin assembly protein LAP-like aug3.g19346 LOC107447663 7e-88
LOC107450342 Ptep1.0/2.0 NW_024973080.1 12 10639 - uncharacterized LOC107450342 aug3.g19346 LOC107450342 0
LOC122272951 Ptep1.0/2.0 NW_024973448.1 7346 9426 - phosphatidylinositol-binding clathrin assembly protein LAP-like aug3.g19346 NA 5e-138
LOC122273130 Ptep1.0/2.0 NW_024974281.1 9380 10293 - uncharacterized LOC122273130 aug3.g19346 NA 3e-36
LOC107446725 Ptep1.0/2.0 NW_024983871.1 378 1286 + tigger transposable element-derived protein 1-like aug3.g19345,aug3.g23815,aug3.g4005,aug3.g19479,aug3.g2831 LOC107446725 0
18 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02