Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107447831 Ptep1.0/2.0 NW_024969791.1 73593 120305 - chitin synthase chs-2 aug3.g1940 LOC107447831 0
LOC107439995 Ptep1.0/2.0 NW_024969988.1 2355026 2355898 - general transcription factor II-I repeat domain-containing protein 2B-like aug3.g44,aug3.g19402,aug3.g14377,aug3.g22016,aug3.g22277,aug3.g20287 LOC107439995 0
LOC107446821 Ptep1.0/2.0 NW_024970197.1 186018 219957 + serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta aug3.g19409,aug3.g19410 LOC107446821 0
LOC122271258 Ptep1.0/2.0 NW_024970674.1 28650 32067 - uncharacterized LOC122271258 aug3.g19409 NA 0
LOC107436727 Ptep1.0/2.0 NW_024970674.1 43517 78037 - uncharacterized LOC107436727 aug3.g22959,aug3.g19408,aug3.g19839 LOC107436727 0
LOC107446815 Ptep1.0/2.0 NW_024971577.1 917 49906 + uncharacterized LOC107446815 aug3.g19407 LOC107446815 0
LOC107446816 Ptep1.0/2.0 NW_024971577.1 52782 64968 - activated RNA polymerase II transcriptional coactivator p15 aug3.g19406 LOC107446816 0
LOC122273976 Ptep1.0/2.0 NW_024985561.1 29 795 - protein FAM200B-like aug3.g19402 NA 3e-172
8 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02