Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107444956 Ptep1.0/2.0 NW_024969637.1 40963 74404 - lethal(2) giant larvae protein homolog 1-like aug3.g10082,aug3.g19646 LOC107444956 0
LOC107447255 Ptep1.0/2.0 NW_024969653.1 553306 628758 + protein lin-28 homolog aug3.g19642 LOC107447255 0
LOC107447253 Ptep1.0/2.0 NW_024969653.1 644064 662718 - PR domain zinc finger protein 1 aug3.g19643 LOC107447253 0
LOC107439400 Ptep1.0/2.0 NW_024969831.1 675143 711072 + pre-mRNA-splicing factor SLU7 aug3.g26785,aug3.g18502,aug3.g19649 LOC107439400 0
LOC107455959 Ptep1.0/2.0 NW_024969841.1 384185 385102 - uncharacterized LOC107455959 aug3.g8202,aug3.g14848,aug3.g19640 LOC107455959 0
LOC107447857 Ptep1.0/2.0 NW_024970047.1 249309 251104 - speckle-type POZ protein B-like aug3.g1962,aug3.g27593,aug3.g19033,aug3.g1961,aug3.g21829,aug3.g1963,aug3.g1964 LOC107447857 0
LOC107452909 Ptep1.0/2.0 NW_024970851.1 4059 82074 + axonemal dynein light intermediate polypeptide 1-like aug3.g19645 LOC107452909 6e-66
LOC107447259 Ptep1.0/2.0 NW_024971172.1 64764 88958 + ataxin-3-like aug3.g19648,aug3.g9601 LOC107438553,LOC107447259 0
LOC107447257 Ptep1.0/2.0 NW_024971226.1 1334 66846 - lethal(2) giant larvae protein homolog 1 aug3.g19646 LOC107447257 0
LOC107447256 Ptep1.0/2.0 NW_024971226.1 84816 119337 - diacylglycerol kinase epsilon aug3.g19644 LOC107447256 0
LOC107452376 Ptep1.0/2.0 NW_024971390.1 49619 51912 + uncharacterized LOC107452376 aug3.g4715,aug3.g2963,aug3.g14240,aug3.g12590,aug3.g19641,aug3.g10210 LOC107452376 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02