Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107447422 Ptep1.0/2.0 NW_024969687.1 1651576 1662533 - glutathione S-transferase 1-like aug3.g19746,aug3.g8465 LOC107447422 0
LOC107447861 Ptep1.0/2.0 NW_024970047.1 558921 579920 - uncharacterized LOC107447861 aug3.g1974 LOC107447861 0
LOC122270092 Ptep1.0/2.0 NW_024970047.1 585123 611569 - shematrin-like protein 1 aug3.g1974 NA 0
LOC122270160 Ptep1.0/2.0 NW_024970074.1 7413 14774 + piggyBac transposable element-derived protein 4-like aug3.g19740 NA 0
LOC122270696 Ptep1.0/2.0 NW_024970321.1 3079 17270 + calmodulin-binding transcription activator 1-like aug3.g19741 NA 3e-92
LOC107447429 Ptep1.0/2.0 NW_024970384.1 272178 279723 + histone acetyltransferase KAT7 aug3.g19749 LOC107447429 0
LOC107447884 Ptep1.0/2.0 NW_024970748.1 45956 112535 - uncharacterized LOC107447884 aug3.g20031,aug3.g19747 LOC107447884 0
LOC122271353 Ptep1.0/2.0 NW_024970748.1 208153 235216 - uncharacterized LOC122271353 aug3.g19747 NA 2e-151
LOC107442707 Ptep1.0/2.0 NW_024970962.1 13712 53081 + putative ammonium transporter 3 aug3.g16762,aug3.g22810,aug3.g19740 LOC107442707 0
LOC107442723 Ptep1.0/2.0 NW_024971162.1 135728 139748 - uncharacterized LOC107442723 aug3.g19745,aug3.g16788,aug3.g2875,aug3.g17006,aug3.g22665 LOC107442723 0
LOC107447420 Ptep1.0/2.0 NW_024971891.1 2538 5513 - putative ammonium transporter 3 aug3.g19740 LOC107447420 0
LOC107455303 Ptep1.0/2.0 NW_024972456.1 15609 23733 - ras-related protein Rab-2A-like aug3.g19745 LOC107455303 0
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02