Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122269273 Ptep1.0/2.0 NW_024969594.1 2255506 2257515 + uncharacterized LOC122269273 aug3.g25318,aug3.g19788,aug3.g18424 NA 0
LOC107445810 Ptep1.0/2.0 NW_024969680.1 1680629 1810237 - E3 ubiquitin-protein ligase HERC2 aug3.g1180,aug3.g19780,aug3.g24831,aug3.g22070 LOC107447476,LOC107445810 0
LOC107447481 Ptep1.0/2.0 NW_024969711.1 1304117 1329529 - calsequestrin-1 aug3.g19785,aug3.g5256 LOC107447481 0
LOC107447480 Ptep1.0/2.0 NW_024969976.1 501809 519305 - forkhead box protein N4 aug3.g19784 LOC107447480 0
LOC107447477 Ptep1.0/2.0 NW_024970026.1 704944 725828 + medium-chain acyl-CoA ligase ACSF2, mitochondrial aug3.g19781,aug3.g6713 LOC107447477 0
LOC107440667 Ptep1.0/2.0 NW_024971206.1 50713 119891 - ubiquitin carboxyl-terminal hydrolase CYLD aug3.g14727,aug3.g19782 LOC107440667 0
LOC107447479 Ptep1.0/2.0 NW_024971206.1 121119 140131 + probable E3 ubiquitin-protein ligase RNF144A-A aug3.g19783 LOC107447479 0
LOC107447910 Ptep1.0/2.0 NW_024972228.1 12786 16417 + uncharacterized LOC107447910 aug3.g1978 LOC107447910 0
LOC107450516 Ptep1.0/2.0 NW_024975781.1 34369 75035 + short-chain specific acyl-CoA dehydrogenase, mitochondrial aug3.g3397,aug3.g19787,aug3.g12268 LOC107450516 0
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02