Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107448025 Ptep1.0/2.0 NW_024969656.1 336932 346417 + cytochrome c oxidase assembly protein COX18, mitochondrial aug3.g2022 LOC107448025 0
LOC107452661 Ptep1.0/2.0 NW_024969662.1 389086 396640 + ras-related protein Rab-30 aug3.g23623,aug3.g20225 LOC107452661 0
LOC107448280 Ptep1.0/2.0 NW_024969662.1 399684 407886 - dTDP-glucose 4,6-dehydratase aug3.g20226 LOC107448280 0
LOC107448277 Ptep1.0/2.0 NW_024969662.1 414923 434477 - uncharacterized LOC107448277 aug3.g20227 LOC107448277 0
LOC107448278 Ptep1.0/2.0 NW_024969662.1 442326 481283 - ATP-dependent RNA helicase DDX1 aug3.g20228 LOC107448278 0
LOC122269730 Ptep1.0/2.0 NW_024969909.1 341626 352397 + uncharacterized LOC122269730 aug3.g20223 NA 4e-96
LOC122271957 Ptep1.0/2.0 NW_024971336.1 99 18136 + uncharacterized LOC122271957 aug3.g20220 NA 0
LOC107438415 Ptep1.0/2.0 NW_024971336.1 20464 45190 + ionotropic receptor 93a aug3.g20220,aug3.g26495 LOC107438415,LOC107448260 0
LOC107448274 Ptep1.0/2.0 NW_024972348.1 2983 14469 + lambda-crystallin aug3.g20221,aug3.g10792 LOC107448274 0
LOC107448273 Ptep1.0/2.0 NW_024972348.1 18743 29216 - NFX1-type zinc finger-containing protein 1 aug3.g10791,aug3.g20222 LOC107448273 0
LOC122273100 Ptep1.0/2.0 NW_024974128.1 2400 11821 + lambda-crystallin homolog aug3.g20221 NA 0
LOC122273668 Ptep1.0/2.0 NW_024978380.1 1531 1947 + lambda-crystallin-like aug3.g20221 NA 0
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02