Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107448063 Ptep1.0/2.0 NW_024969602.1 16927 21523 + uncharacterized LOC107448063 aug3.g2032 LOC107448063 0
LOC107448518 Ptep1.0/2.0 NW_024969655.1 800098 818316 + uncharacterized LOC107448518 aug3.g20329 LOC107448518 0
LOC122268373 Ptep1.0/2.0 NW_024970423.1 304532 357979 + putative elongator complex protein 1 aug3.g20326,aug3.g10852 NA 0
LOC107448496 Ptep1.0/2.0 NW_024971118.1 7 11293 + elongator complex protein 1 aug3.g20326,aug3.g22169 LOC107448496 0
LOC107448497 Ptep1.0/2.0 NW_024971118.1 18594 29170 - zinc finger protein 512B-like aug3.g20325 LOC107448497 0
LOC107448486 Ptep1.0/2.0 NW_024971131.1 5523 9861 - adult-specific rigid cuticular protein 15.7-like aug3.g20323,aug3.g20322,aug3.g13014,aug3.g13013 LOC107448486 0
LOC110281908 Ptep1.0/2.0 NW_024971131.1 17337 22416 - adult-specific rigid cuticular protein 15.7-like aug3.g20322 LOC110281908 0
LOC107448487 Ptep1.0/2.0 NW_024971131.1 33796 46746 + succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial aug3.g20321 LOC107448487 0
LOC107448489 Ptep1.0/2.0 NW_024971131.1 53136 62662 - dual specificity protein phosphatase 3 aug3.g20320 LOC107448489 0
LOC107446970 Ptep1.0/2.0 NW_024971616.1 21415 28377 - fibroin heavy chain-like aug3.g20324,aug3.g7951,aug3.g19487,aug3.g8809 LOC107446970 0
LOC122272546 Ptep1.0/2.0 NW_024972219.1 2231 6083 - uncharacterized LOC122272546 aug3.g20324 NA 0
LOC110282972 Ptep1.0/2.0 NW_024973182.1 3074 5823 - sialin aug3.g14742,aug3.g20328 LOC110282972 0
LOC122274094 Ptep1.0/2.0 NW_024991504.1 12 558 - sialin-like aug3.g20328 NA 0
13 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02