Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107448048 Ptep1.0/2.0 NW_024969602.1 625390 674312 - uncharacterized LOC107448048 aug3.g2054 LOC107448048 0
LOC107448975 Ptep1.0/2.0 NW_024969663.1 952883 994029 - solute carrier family 41 member 1 aug3.g14906,aug3.g20547 LOC107448975 0
LOC107441442 Ptep1.0/2.0 NW_024969663.1 994466 1016125 + vesicle-associated membrane protein-associated protein A aug3.g15907,aug3.g20546 LOC107441442 0
LOC107439174 Ptep1.0/2.0 NW_024970106.1 1480198 1507433 - S-adenosylmethionine sensor upstream of mTORC1 aug3.g26701,aug3.g19126,aug3.g2982,aug3.g27260,aug3.g11936,aug3.g23713,aug3.g2296,aug3.g22406,aug3.g8408,aug3.g22914,aug3.g21080,aug3.g20545,aug3.g3761,aug3.g4881,aug3.g19704,aug3.g16522,aug3.g5565,aug3.g11212,aug3.g25515,aug3.g3769,aug3.g3195,aug3.g26523 LOC107439174 0
LOC107448961 Ptep1.0/2.0 NW_024970309.1 41729 50275 - uncharacterized LOC107448961 aug3.g20542 LOC107448961 0
LOC107442041 Ptep1.0/2.0 NW_024970605.1 187248 213648 - 28S ribosomal protein S27, mitochondrial-like aug3.g20549,aug3.g16311 LOC107442041 0
LOC107448976 Ptep1.0/2.0 NW_024970605.1 213667 246356 + NAD-dependent protein deacetylase Sirt6 aug3.g21513,aug3.g20548 LOC107448976 0
LOC122271155 Ptep1.0/2.0 NW_024970605.1 220770 226690 - uncharacterized LOC122271155 aug3.g20549 NA 2e-163
LOC122274081 Ptep1.0/2.0 NW_024990660.1 44152 47353 + uncharacterized LOC122274081 aug3.g20540 NA 0
LOC107448959 Ptep1.0/2.0 NW_024990660.1 52296 103145 - endophilin-B1 aug3.g20540,aug3.g20541 LOC107448959 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02