Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107447494 Ptep1.0/2.0 NW_024969799.1 871508 897195 + sialin-like aug3.g20873,aug3.g20770,aug3.g25663,aug3.g25664 LOC107449458,LOC107447494 0
LOC107448084 Ptep1.0/2.0 NW_024970074.1 297326 356343 - DNA-directed RNA polymerase I subunit RPA1 aug3.g2077 LOC107448084 0
LOC107449459 Ptep1.0/2.0 NW_024970184.1 230143 273485 + trichoplein keratin filament-binding protein aug3.g20772,aug3.g19694,aug3.g16540 LOC107449459 0
LOC122271189 Ptep1.0/2.0 NW_024970632.1 13550 14439 + uncharacterized LOC122271189 aug3.g20779 NA 3e-34
LOC122271190 Ptep1.0/2.0 NW_024970632.1 39200 39686 + uncharacterized LOC122271190 aug3.g11925,aug3.g20778 NA 0
LOC107449462 Ptep1.0/2.0 NW_024970632.1 42559 54681 - gamma-secretase subunit PEN-2 aug3.g20776 LOC107449462 4e-180
LOC122272642 Ptep1.0/2.0 NW_024972418.1 559 3878 + uncharacterized LOC122272642 aug3.g20773 NA 3e-116
LOC122272696 Ptep1.0/2.0 NW_024972544.1 53580 55954 - uncharacterized LOC122272696 aug3.g20777 NA 3e-153
8 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02