Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107438035 Ptep1.0/2.0 NW_024969634.1 2433751 2455442 + membrane metallo-endopeptidase-like 1 aug3.g26384,aug3.g20789 LOC107449483,LOC107438035 0
LOC107438216 Ptep1.0/2.0 NW_024969817.1 851873 985264 + unconventional myosin-XV-like aug3.g12907,aug3.g20781,aug3.g21800 LOC107438216 0
LOC107448923 Ptep1.0/2.0 NW_024969974.1 1431239 1480972 - neprilysin-2 aug3.g19899,aug3.g20516,aug3.g26606,aug3.g20518,aug3.g20786,aug3.g20517 LOC107448923 0
LOC107445751 Ptep1.0/2.0 NW_024970056.1 594018 724305 - unconventional myosin-XV aug3.g18724,aug3.g12030,aug3.g20161,aug3.g20780 LOC107445751 0
LOC122270113 Ptep1.0/2.0 NW_024970056.1 731357 738733 + unconventional myosin-XV-like aug3.g20780 NA 5e-70
LOC107449479 Ptep1.0/2.0 NW_024970260.1 50043 100489 - neprilysin-2 aug3.g20785 LOC107449479 0
LOC107449477 Ptep1.0/2.0 NW_024970260.1 107446 121490 + girdin-like aug3.g20784 LOC107449477 0
LOC107453264 Ptep1.0/2.0 NW_024970665.1 173237 266100 + uncharacterized LOC107453264 aug3.g5350,aug3.g20787 LOC107453265,LOC107453264 0
LOC107449481 Ptep1.0/2.0 NW_024973303.1 2204 3910 + uncharacterized LOC107449481 aug3.g20788,aug3.g23724 LOC107449481 0
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02