Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107449872 Ptep1.0/2.0 NW_024969716.1 612889 672846 - uncharacterized LOC107449872 aug3.g20979 LOC107449872 0
LOC110282537 Ptep1.0/2.0 NW_024969810.1 956215 958622 + uncharacterized LOC110282537 aug3.g20974 LOC110282537 5e-125
LOC107449852 Ptep1.0/2.0 NW_024970103.1 285878 307029 - carotenoid isomerooxygenase aug3.g20976,aug3.g10962,aug3.g10961 LOC107449852 0
LOC122270228 Ptep1.0/2.0 NW_024970103.1 309941 334777 - beta,beta-carotene 15,15'-dioxygenase-like aug3.g20976 NA 0
LOC107450222 Ptep1.0/2.0 NW_024970404.1 320131 330189 + uncharacterized protein C18orf63-like aug3.g3224,aug3.g20977 LOC107450222,LOC107450235,LOC107449853 0
LOC107456125 Ptep1.0/2.0 NW_024970655.1 28212 29186 + uncharacterized LOC107456125 aug3.g8332,aug3.g12342,aug3.g16112,aug3.g20975,aug3.g27116 LOC107456125 0
LOC122272092 Ptep1.0/2.0 NW_024971480.1 29424 33096 - uncharacterized LOC122272092 aug3.g20974 NA 2e-32
LOC107449851 Ptep1.0/2.0 NW_024971517.1 46678 59977 + WASH complex subunit 1 aug3.g20973 LOC107449851 0
LOC107449850 Ptep1.0/2.0 NW_024971517.1 61014 69208 - uncharacterized LOC107449850 aug3.g20972 LOC107449850 0
LOC107449848 Ptep1.0/2.0 NW_024971609.1 5718 14707 + apolipoprotein D aug3.g20971,aug3.g22390 LOC107449848 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02