Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107449930 Ptep1.0/2.0 NW_024969840.1 16272 17120 - zinc finger BED domain-containing protein 5-like aug3.g21001,aug3.g20267 LOC107449930 0
LOC122269897 Ptep1.0/2.0 NW_024969974.1 9705 12613 + protein ZBED8-like aug3.g2100 NA 2e-90
LOC122270025 Ptep1.0/2.0 NW_024970018.1 389814 390567 + protein ZBED8-like aug3.g2100 NA 7e-94
LOC107443072 Ptep1.0/2.0 NW_024970066.1 463589 464665 + TD and POZ domain-containing protein 3 aug3.g7325,aug3.g21007 LOC107443072 0
LOC107449933 Ptep1.0/2.0 NW_024971000.1 120068 120790 - TD and POZ domain-containing protein 3-like aug3.g21007 LOC107449933 0
LOC107449935 Ptep1.0/2.0 NW_024971000.1 127103 128164 - speckle-type POZ protein-like aug3.g21006 LOC107449935 0
LOC122272921 Ptep1.0/2.0 NW_024973315.1 4594 5254 - protein ZBED8-like aug3.g2100 NA 8e-73
LOC107449932 Ptep1.0/2.0 NW_024974240.1 2809 3879 - TD and POZ domain-containing protein 3-like aug3.g21005 LOC107449932 0
LOC122273407 Ptep1.0/2.0 NW_024975897.1 3814 4464 + protein ZBED8-like aug3.g21001 NA 0
LOC122273419 Ptep1.0/2.0 NW_024975959.1 1594 2086 + protein ZBED8-like aug3.g21001 NA 0
LOC107445903 Ptep1.0/2.0 NW_024977754.1 2840 3274 + protein ZBED8-like aug3.g21001,aug3.g11215 LOC107445903 0
LOC107452740 Ptep1.0/2.0 NW_024977919.1 1994 2892 + speckle-type POZ protein B-like aug3.g4953,aug3.g21009,aug3.g16764 LOC107452740 0
LOC107439678 Ptep1.0/2.0 NW_024984574.1 553 1463 + speckle-type POZ protein-like aug3.g23259,aug3.g20853,aug3.g20852,aug3.g4024,aug3.g19293,aug3.g4025,aug3.g21005,aug3.g19294 LOC107439678 0
13 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02