Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107448178 Ptep1.0/2.0 NW_024969692.1 39549 41235 - RNA pseudouridylate synthase domain-containing protein 1 aug3.g2118 LOC107448178 0
LOC107450421 Ptep1.0/2.0 NW_024969801.1 3927996 3931755 + DNA-binding protein inhibitor ID-2 aug3.g21189 LOC107450421 0
LOC107450415 Ptep1.0/2.0 NW_024969828.1 1000667 1002235 - rhomboid-related protein 4-like aug3.g21187,aug3.g19855,aug3.g21185 LOC107450415 0
LOC107447581 Ptep1.0/2.0 NW_024969828.1 1002373 1005004 + Fanconi anemia group J protein homolog aug3.g19856,aug3.g21184,aug3.g21186 LOC107447581 0
LOC107450414 Ptep1.0/2.0 NW_024970145.1 483174 512832 + alkylglycerol monooxygenase aug3.g7729,aug3.g21183 LOC107450414 0
LOC107451836 Ptep1.0/2.0 NW_024970394.1 3288 21785 - DNA polymerase alpha subunit B-like aug3.g21188,aug3.g4332 LOC107451836 0
LOC122270960 Ptep1.0/2.0 NW_024970478.1 234666 269270 + uncharacterized LOC122270960 aug3.g21180 LOC107445802 0
LOC107450416 Ptep1.0/2.0 NW_024976059.1 2905 5259 - Fanconi anemia group J protein homolog aug3.g21184 LOC107450416 0
8 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02