Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268793 Ptep1.0/2.0 NW_024969677.1 63423 64315 + uncharacterized LOC122268793 aug3.g22045 NA 1e-89
LOC107436355 Ptep1.0/2.0 NW_024969815.1 763066 807749 - oocyte zinc finger protein XlCOF6.1 aug3.g18966,aug3.g16370,aug3.g11139,aug3.g23931,aug3.g10099,aug3.g19028,aug3.g26680,aug3.g658,aug3.g6866,aug3.g3777,aug3.g13767,aug3.g1246,aug3.g20365,aug3.g12813,aug3.g18681,aug3.g5858,aug3.g20791,aug3.g17997,aug3.g11223,aug3.g15649,aug3.g3781,aug3.g2204 LOC107454207,LOC107436355 0
LOC107448398 Ptep1.0/2.0 NW_024969838.1 571655 720227 + protein king tubby 1 aug3.g2204 LOC107448398 0
LOC107448399 Ptep1.0/2.0 NW_024969838.1 686128 692825 - uncharacterized LOC107448399 aug3.g2204 LOC107448399 1e-133
LOC107441304 Ptep1.0/2.0 NW_024971030.1 31658 32703 - speckle-type POZ protein-like aug3.g22049,aug3.g15808,aug3.g15807 LOC107441304 0
LOC107454016 Ptep1.0/2.0 NW_024973050.1 41 5007 + uncharacterized LOC107454016 aug3.g22045 LOC107454016 0
LOC107454015 Ptep1.0/2.0 NW_024973050.1 5133 9126 + uncharacterized LOC107454015 aug3.g22046,aug3.g22045,aug3.g21864,aug3.g21865 LOC107454015 0
LOC122273287 Ptep1.0/2.0 NW_024975192.1 3271 4963 + TD and POZ domain-containing protein 4-like aug3.g22049 NA 0
LOC107451214 Ptep1.0/2.0 NW_024976188.1 370 1833 - rho-related BTB domain-containing protein 3-like aug3.g15809,aug3.g21425,aug3.g22048,aug3.g14229 LOC107451214 0
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02