Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107448438 Ptep1.0/2.0 NW_024969636.1 1559786 1578299 + pollen-specific leucine-rich repeat extensin-like protein 3 aug3.g2217 LOC107448438 0
LOC122270987 Ptep1.0/2.0 NW_024969636.1 1580247 1585306 + uncharacterized LOC122270987 aug3.g2217 LOC107448438 0
LOC122268584 Ptep1.0/2.0 NW_024969657.1 428918 432658 + uncharacterized LOC122268584 aug3.g22175 NA 7e-16
LOC107453699 Ptep1.0/2.0 NW_024969669.1 832083 928365 + ferroxidase HEPHL1 aug3.g5694,aug3.g22177 LOC107454619,LOC107453699 0
LOC107456599 Ptep1.0/2.0 NW_024969694.1 1090185 1103478 + uncharacterized LOC107456599 aug3.g22175 LOC107456599 1e-19
LOC107448369 Ptep1.0/2.0 NW_024969979.1 165191 254094 + rho-related BTB domain-containing protein 1 aug3.g10357,aug3.g22170 LOC107454588,LOC107448369 0
LOC107447945 Ptep1.0/2.0 NW_024970323.1 78784 294815 - papilin aug3.g15203,aug3.g15205,aug3.g22172 LOC107447945 0
LOC107447240 Ptep1.0/2.0 NW_024971006.1 182702 183415 + uncharacterized LOC107447240 aug3.g10253,aug3.g22171,aug3.g2595 LOC107447240 0
LOC122273836 Ptep1.0/2.0 NW_024981358.1 1676 2100 + amine oxidase [flavin-containing] B-like aug3.g22175 NA 2e-92
LOC107454602 Ptep1.0/2.0 NW_024984507.1 43 629 - uncharacterized LOC107454602 aug3.g22171 LOC107454602 0
LOC122273990 Ptep1.0/2.0 NW_024986048.1 639 1123 + uncharacterized LOC122273990 aug3.g22171 NA 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02