Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107438137 Ptep1.0/2.0 NW_024969793.1 699616 824568 + formin-J-like aug3.g26411,aug3.g15945,aug3.g16965,aug3.g18789,aug3.g3845,aug3.g20638,aug3.g27431,aug3.g11569,aug3.g26749,aug3.g13556,aug3.g568,aug3.g15812,aug3.g22828,aug3.g12149,aug3.g5637,aug3.g892,aug3.g8296,aug3.g18962,aug3.g6082,aug3.g24558,aug3.g9808,aug3.g2790,a LOC107438137 0
LOC107448576 Ptep1.0/2.0 NW_024969842.1 1230261 1258434 + uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02 aug3.g2282 LOC107448576 0
LOC107440339 Ptep1.0/2.0 NW_024969870.1 869731 944345 - eukaryotic translation initiation factor 4 gamma 3 aug3.g27032,aug3.g4401,aug3.g19766,aug3.g15823,aug3.g15822,aug3.g18933,aug3.g22827 LOC110283261,LOC107440339 0
LOC107444022 Ptep1.0/2.0 NW_024969988.1 74250 75732 + sulfotransferase ssu-1-like aug3.g7438,aug3.g19069,aug3.g22825,aug3.g18231,aug3.g18908 LOC107444022 0
LOC107443399 Ptep1.0/2.0 NW_024970299.1 396457 458900 + maltase A2 aug3.g17200,aug3.g22823 LOC107443399 0
LOC107457291 Ptep1.0/2.0 NW_024970382.1 360224 378464 - ERI1 exoribonuclease 3 aug3.g22829 LOC107446590,LOC107457291 0
LOC107457222 Ptep1.0/2.0 NW_024973318.1 3542 4778 + sulfotransferase ssu-1 aug3.g22825 LOC107457222 0
LOC122272998 Ptep1.0/2.0 NW_024973646.1 153 9156 + ERI1 exoribonuclease 3-like aug3.g22829 NA 0
8 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02