Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107457287 Ptep1.0/2.0 NW_024969871.1 727679 779447 + ras-related protein ced-10-like aug3.g14102,aug3.g23225,aug3.g11036,aug3.g14101 LOC107439402,LOC107457287 0
LOC107439349 Ptep1.0/2.0 NW_024969900.1 153808 160715 + cold and drought-regulated protein CORA aug3.g23220 LOC107439349 1e-159
LOC107448659 Ptep1.0/2.0 NW_024970023.1 236683 250245 - transmembrane protein 134 aug3.g2322 LOC107448659 0
LOC107436905 Ptep1.0/2.0 NW_024970255.1 72326 105211 - tetratricopeptide repeat protein 28 aug3.g11916,aug3.g23227 LOC107436905 0
LOC107439426 Ptep1.0/2.0 NW_024970439.1 244338 263920 - degenerin deg-1-like aug3.g23228,aug3.g19986 LOC107439426 0
LOC122270902 Ptep1.0/2.0 NW_024970439.1 263667 269222 - uncharacterized LOC122270902 aug3.g23228 NA 9e-168
LOC122271868 Ptep1.0/2.0 NW_024971242.1 63674 64929 - uncharacterized LOC122271868 aug3.g25043,aug3.g23223 NA 0
7 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02