Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107453358 Ptep1.0/2.0 NW_024969770.1 732567 757875 + zinc finger protein ZIC 4 aug3.g23788 LOC107453358 0
LOC107453369 Ptep1.0/2.0 NW_024969770.1 769242 823493 - rho-associated protein kinase 2 aug3.g23787 LOC107453369 0
LOC107453377 Ptep1.0/2.0 NW_024969770.1 839643 868810 + vacuolar protein sorting-associated protein 26B-like aug3.g24512,aug3.g23786,aug3.g23785 LOC107443992,LOC107453377 0
LOC122269239 Ptep1.0/2.0 NW_024969770.1 861650 862475 + pseudogene aug3.g23785 NA 2e-154
LOC107453374 Ptep1.0/2.0 NW_024969770.1 890718 955805 - polycomb protein Scm aug3.g23784 LOC107453374 0
LOC107453373 Ptep1.0/2.0 NW_024969770.1 955936 981610 + transmembrane protein 185A aug3.g23783 LOC107453373 0
LOC107453381 Ptep1.0/2.0 NW_024969770.1 988310 999255 - uncharacterized LOC107453381 aug3.g23782 LOC107453381 0
LOC107453352 Ptep1.0/2.0 NW_024969770.1 1012944 1094880 - LIM/homeobox protein Awh aug3.g23781 LOC107453352 0
LOC107453361 Ptep1.0/2.0 NW_024969770.1 1157501 1192666 + MICOS complex subunit Mic60 aug3.g23780 LOC107453361 0
LOC122271388 Ptep1.0/2.0 NW_024970771.1 627 1225 + uncharacterized LOC122271388 aug3.g22255,aug3.g23789,aug3.g5717 NA 0
LOC107449654 Ptep1.0/2.0 NW_024971335.1 45516 49484 + MICOS complex subunit MIC60 aug3.g23780,aug3.g2888 LOC107449654 0
LOC107448729 Ptep1.0/2.0 NW_024971946.1 17528 19635 + uncharacterized LOC107448729 aug3.g2378 LOC107448729 0
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02