Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107455277 Ptep1.0/2.0 NW_024969630.1 2756980 2928624 + teneurin-m-like aug3.g25032 LOC107455277 0
LOC107455275 Ptep1.0/2.0 NW_024969630.1 2943415 2996923 - protein diaphanous aug3.g25033 LOC107455275 0
LOC107455273 Ptep1.0/2.0 NW_024969630.1 3042125 3204822 + tolloid-like protein 2 aug3.g25034 LOC107455273 0
LOC107455359 Ptep1.0/2.0 NW_024969756.1 273369 295755 - 60S ribosomal export protein NMD3 aug3.g25039 LOC107455359 0
LOC107455367 Ptep1.0/2.0 NW_024969756.1 295813 303038 + protein archease-like aug3.g25038 LOC107455367 0
LOC107455363 Ptep1.0/2.0 NW_024969756.1 315101 336768 - dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 aug3.g25037 LOC107455363 0
LOC107455362 Ptep1.0/2.0 NW_024969756.1 336907 364805 + MFS-type transporter SLC18B1 aug3.g25036 LOC107455362 0
LOC107455361 Ptep1.0/2.0 NW_024969756.1 379836 401962 - arginine kinase aug3.g25035 LOC107455361 0
LOC107448964 Ptep1.0/2.0 NW_024970027.1 748053 773982 - uncharacterized LOC107448964 aug3.g2503 LOC107448964 0
LOC122270560 Ptep1.0/2.0 NW_024970244.1 338870 350726 - uncharacterized LOC122270560 aug3.g555,aug3.g27021,aug3.g3303,aug3.g24086,aug3.g25561,aug3.g25737,aug3.g11378,aug3.g26737,aug3.g23862,aug3.g13207,aug3.g25176,aug3.g23432,aug3.g27815,aug3.g4200,aug3.g26053,aug3.g25031,aug3.g24630,aug3.g22423,aug3.g17890,aug3.g15308,aug3.g6826,aug3.g22 NA 0
LOC110282017 Ptep1.0/2.0 NW_024972115.1 19347 27254 + lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog aug3.g25034 LOC110282017 8e-75
LOC122273084 Ptep1.0/2.0 NW_024974025.1 5135 5710 + arginine kinase-like aug3.g25035 LOC107455361 3e-166
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02