Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107449018 Ptep1.0/2.0 NW_024969596.1 1538529 1556312 - AP-3 complex subunit mu-2 aug3.g2529 LOC107449018 0
LOC107456722 Ptep1.0/2.0 NW_024969898.1 2765327 2800339 - extended synaptotagmin-2 aug3.g25297 LOC107456722 0
LOC107456717 Ptep1.0/2.0 NW_024969898.1 2815769 2833200 + protein canopy homolog 2 aug3.g25295 LOC107456717 0
LOC107456721 Ptep1.0/2.0 NW_024969898.1 2841688 2882094 + thyrotropin-releasing hormone-degrading ectoenzyme aug3.g25294 LOC107456721 0
LOC107456707 Ptep1.0/2.0 NW_024969898.1 2905075 2963178 - uncharacterized LOC107456707 aug3.g25292 LOC107456707 0
LOC107456719 Ptep1.0/2.0 NW_024969898.1 2997709 3018101 - protein NCBP2AS2 homolog aug3.g25291 LOC107456719 0
LOC107456709 Ptep1.0/2.0 NW_024969898.1 3042923 3170589 + poly(rC)-binding protein 3-like aug3.g25290,aug3.g25289 LOC107456709 0
LOC122270693 Ptep1.0/2.0 NW_024970320.1 829773 870777 + uncharacterized LOC122270693 aug3.g9818,aug3.g18193,aug3.g15566,aug3.g26714,aug3.g1097,aug3.g19330,aug3.g19261,aug3.g22403,aug3.g16329,aug3.g7403,aug3.g24358,aug3.g9152,aug3.g19188,aug3.g11063,aug3.g8790,aug3.g25600,aug3.g21923,aug3.g27165,aug3.g17253,aug3.g25298 NA 0
LOC122270936 Ptep1.0/2.0 NW_024970461.1 659627 661060 - uncharacterized LOC122270936 aug3.g2529 NA 2e-19
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02