Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107453692 Ptep1.0/2.0 NW_024969823.1 323399 339606 + transmembrane anterior posterior transformation protein 1 aug3.g5707,aug3.g27082 LOC107453692 0
LOC107440496 Ptep1.0/2.0 NW_024969823.1 363735 428544 + CAD protein aug3.g27081,aug3.g27080,aug3.g24596 LOC107440496 0
LOC122269448 Ptep1.0/2.0 NW_024969823.1 390517 409657 - uncharacterized LOC122269448 aug3.g27081 NA 1e-21
LOC107452737 Ptep1.0/2.0 NW_024969823.1 431909 458457 + armadillo repeat-containing protein 2-like aug3.g27080,aug3.g21789 LOC107452737,LOC107440495 0
LOC122269496 Ptep1.0/2.0 NW_024969840.1 38482 39269 + pseudogene aug3.g27084 NA 2e-114
LOC122270832 Ptep1.0/2.0 NW_024970393.1 3896 6155 - uncharacterized LOC122270832 aug3.g27084 NA 0
LOC122270833 Ptep1.0/2.0 NW_024970393.1 8317 16131 - uncharacterized LOC122270833 aug3.g27084,aug3.g27085,aug3.g12520 NA 0
LOC110283546 Ptep1.0/2.0 NW_024970393.1 20401 29496 + uncharacterized LOC110283546 aug3.g27086 LOC110283546 0
LOC107440535 Ptep1.0/2.0 NW_024970393.1 33563 38115 - uncharacterized LOC107440535 aug3.g27087 LOC107440535 0
LOC107440536 Ptep1.0/2.0 NW_024970393.1 41701 80320 + mediator of RNA polymerase II transcription subunit 16 aug3.g27088 LOC107440536 0
LOC107440550 Ptep1.0/2.0 NW_024970393.1 91423 98123 + uncharacterized LOC107440550 aug3.g27089,aug3.g27098 LOC107440550 0
LOC122270835 Ptep1.0/2.0 NW_024970393.1 392621 400946 + uncharacterized LOC122270835 aug3.g27084 NA 0
LOC107449344 Ptep1.0/2.0 NW_024970471.1 749475 756345 - chaoptin aug3.g2708 LOC107449344 0
LOC110283545 Ptep1.0/2.0 NW_024971467.1 36085 46894 + acid-sensing ion channel 1C-like aug3.g27083 LOC110283545 0
LOC107440551 Ptep1.0/2.0 NW_024971467.1 52437 59403 + acid-sensing ion channel 1-like aug3.g27083 LOC107440551 0
LOC107440542 Ptep1.0/2.0 NW_024971467.1 73973 78984 - uncharacterized LOC107440542 aug3.g27084 LOC107440542 0
LOC107440255 Ptep1.0/2.0 NW_024972083.1 6157 12082 - uncharacterized LOC107440255 aug3.g14386,aug3.g27084,aug3.g3598 LOC107440255 0
LOC122272825 Ptep1.0/2.0 NW_024972951.1 1631 13683 + armadillo repeat-containing protein 2-like aug3.g27080 NA 0
LOC107444020 Ptep1.0/2.0 NW_024973003.1 2329 12405 + uncharacterized LOC107444020 aug3.g27088,aug3.g2940 LOC107444020 2e-71
LOC122273469 Ptep1.0/2.0 NW_024976359.1 1648 2259 + pseudogene aug3.g27084 NA 1e-166
20 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02